Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2054 |
Symbol | |
ID | 7972456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2198169 |
End bp | 2199419 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644792650 |
Product | protein of unknown function DUF323 |
Protein accession | YP_002943964 |
Protein GI | 239815054 |
COG category | [S] Function unknown |
COG ID | [COG1262] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03440] conserved hypothetical protein TIGR03440 |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.254941 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTCGA CATTGCCTGT TTATAGCGTG GCCGGTGCGC CCGAGGCACT CGCGCTGCGC GCGGGGCCGC CGGCATCGGT GCGCGCGGCG CTGCTGGCTG CACGGCGGCG CACGCTCGAC CTCGCGGACG ATTTCCGGGC CGCGCTGGGG GATGCCTATC CCGGCATCGG CTACGCGCCC GAACTCAATC CGCCGCTCTG GGAGCTGGGC CACGTGGCCT GGTTCCAGGA ATGGTGGATC GGCCGCAACC GGCAGCGCGC ACGCGGCGTG GCCTGCGAGC CGGACCACGC GCGCGAGCCT TCGCTGCTGC CGCAGGCCGA TGCCTGGTAC GACTCCAGCC GCGTGGCGCA CCGCACACGA TGGGCGCTCC CGCTGCCCGA TGCCGAGGCC ACGCGCGGCT ACCTCGAACG CACGTTTGCG CAAACGTTGG CACTGCTGGA CGAGCTTCCG CCCGATGCGC ACGACGATGC GCTGTACTTC TTCCGCCTGG TCGCCCTGCA CGAGGCCATG CACGCGGAAG CGGCGGCCTA CATGGCCGAA GGCCTGGGCA TCTCGCTGCG CGAGGGCGGG CCCGGGCCGC AGCTTGCGGA GGATGCGGAA CTGGAACTGC CGGCCCGGCG CTTTCGCATC GGCTCCGAGG CCGGCGCCGG CTTTGCGTTC GACAACGAGC TGCTGCCGCA CGATGTCGCC ATCGGGCCAC TGCGCATCGA TGCGCAGGCC GTGAGCTGGG CGCGCTTCCT GCCGTTCGTG GAAGCCGGCG GCTACGAAAA CCCGGCCTGG TGGTCCGACG CGGGCCGCGG CTGGCTCGCG CGCCAGCCGC TGCGCCAGCC CGCCTGTCTT CGTGCGGCGG GCACCGGTTG GCAGCAGCAG CGCGGCGGCC GCTGGCTGCC GCTCGGCCCG CAGGCCGCTG CGGTCCACCT GAACGCGCAC GAAGCCGAGG CCTGGTGCCG CTGGGCCGGG CGGCGGCTGC CGACCGAAGC CGAATGGGAG TGCGCGGCGC TCACGCTGCC GGGCTTCGCC TGGGGCCGGG TCTGGGAATG GACCTCGAGC CCGTTCGAGC CTTACCCAGG CTTCGCGCCC CATCCCTACC GCGACTACTC GGCGCCGTGG TTCGGCACCC GGCGGGTGCT GCGCGGCGCC TGCCACGCCA CGTCGGCGGC GCTCGCGCAT GCGCGCTACC GCAACTTCTT CGAGCCGCAC CGCCGCGACA TCTTCGCCGG CTTCCGCAGC TGCCGGGCCG CCGGCGGGTG A
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Protein sequence | MDSTLPVYSV AGAPEALALR AGPPASVRAA LLAARRRTLD LADDFRAALG DAYPGIGYAP ELNPPLWELG HVAWFQEWWI GRNRQRARGV ACEPDHAREP SLLPQADAWY DSSRVAHRTR WALPLPDAEA TRGYLERTFA QTLALLDELP PDAHDDALYF FRLVALHEAM HAEAAAYMAE GLGISLREGG PGPQLAEDAE LELPARRFRI GSEAGAGFAF DNELLPHDVA IGPLRIDAQA VSWARFLPFV EAGGYENPAW WSDAGRGWLA RQPLRQPACL RAAGTGWQQQ RGGRWLPLGP QAAAVHLNAH EAEAWCRWAG RRLPTEAEWE CAALTLPGFA WGRVWEWTSS PFEPYPGFAP HPYRDYSAPW FGTRRVLRGA CHATSAALAH ARYRNFFEPH RRDIFAGFRS CRAAGG
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