Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1862 |
Symbol | |
ID | 7970879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1993919 |
End bp | 1994692 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644792463 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002943778 |
Protein GI | 239814868 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.116723 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCCGCA AGCTCCTGCT TTCTCCGGCC CTGCGCCCGT TCCTCTTGAT CCTGCTGCTG CTGGTGCTGT GGGACGTGGC GATCCGGCTC TTCAGGATTC CGGCCTACCT GATTCCACCG CCGTGGGAAG TGGTGAAGCA GCTCGTGGCC GAATGGCCGC GCCTGTTGGC CGAGAGCTGG AAGACCACGC TCGCCACGCT CGGCGGCTTC GGCCTGACGA TCTTGATCGG CATACCGATT GCGATGGTCA TCGCCTACTC GCGGCTGGTC GAGTCGTACG TGTACCCGCT GCTGGTGTTC TCGCAGAGCA TTCCCAAGGT GGCGATTGCG CCTCTCTTCG TGGTGTGGTT CGGCTTCGGC ATCTTTCCGA AGGTGATCAG TGCGTTCCTG CTGGGTTTCT TTCCGGTGGT GGTGTCGACG GTGATGGGCT TCAAGTCGGT CGAGCCCGAC ATGCTCGACC TGGCCCGCTC GATGGGCGCG AGCCGGCTGC AGACCTTCTT CAAGATCAGC CTGCCGCAGG CCATGCCCGC GATCTTCAGC GGCCTGAAGG TGTCGGTGAC GCTGGCCGTG GTGGGTGCGG TGGTCGGCGA GTTCGTCGGC TCCAACTCGG GCATCGGCTA CGTGCTGCAG GTGGCCAACG GCAACTTCGA CCTGCCCCTG ATGTTTGCCG CGCTCGTGGT GCTGTCGAGC ATCGGCGTGA TTCTTTTCGT CGCGGTCGAC ATCGTCGAGC GCGTGATGAT TCCGTGGCAT GCCTCGCAGC GCCACGCGAA CTGA
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Protein sequence | MLRKLLLSPA LRPFLLILLL LVLWDVAIRL FRIPAYLIPP PWEVVKQLVA EWPRLLAESW KTTLATLGGF GLTILIGIPI AMVIAYSRLV ESYVYPLLVF SQSIPKVAIA PLFVVWFGFG IFPKVISAFL LGFFPVVVST VMGFKSVEPD MLDLARSMGA SRLQTFFKIS LPQAMPAIFS GLKVSVTLAV VGAVVGEFVG SNSGIGYVLQ VANGNFDLPL MFAALVVLSS IGVILFVAVD IVERVMIPWH ASQRHAN
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