Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1808 |
Symbol | |
ID | 7970825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1942712 |
End bp | 1944931 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644792409 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_002943724 |
Protein GI | 239814814 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.433802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCCTT TCGGCGCATT GATGCTGGCC GCCTCTGTCA GCAGTTGGGC GCAGACGCCT GAAGCCCCGG TGCAGGGCGG CACGCTTGGA ACCGTGACGG TGACCGAGCA GGCCGAGGTC CAGGGCAAGG ACCAGGTCCA GACCAGGAAA ACCAACATCG GCAAGGGAAC GCAGGACATC CGCGACATTC CGCAATCGAT CAACGTCATC ACCGAAAAGC TGATCGACGA CGTCAAGCTC GACACGCTGA AGGACGCCTT GCACTATTCG GCGGGCATCA CCTTTGCCGC GACCGAGAAC GGCACCGACC AGGACATCCG GCTGCGCGGC TTCCCGATCG CCAGCACCGG CGACCTGATG ATCGACGGCA TGCGCGACCC CTCGCAGTAC GACCGCGACA CCTTCAACCT CGACCGCGTC GAAGTGATGC GCGGCTCGGC CTCCATGCTC TTCGGCCGCG GCTCCACGGG CGGCGTCGTG AACCAGGTGA GCAAGAGGCC GCTGCTGGCC GACCAGACCG ACGTCGTGGG TACGCTGGGC AGTGGCGGCT ACTTTCGCAC CACCGCCGAT TTCAACGTGC GCACCGGCGA GACCTCGGCA CTGCGCATCA ACGCGATGTA CAACAAGGCC GACAACGGCG GCGCGAAGAT CGACAAGTAC GGCATCGCAC CCTCGTACAG CTGGGGCCTG GGGACCGCGG ACGAATTCAC CGTGGGCCTG TTCCACCTGA AGAACAACAA CGTGCCGATG TCGGCCGTGC GCTACGTCAA CGGCAGCCTG GCGCCGGTCA AGCCCGGCAA CTTCTACGGC ACCTCGGCGG ACTTCGTCGA CGGCGAGGCG AACTACGTGC ACGGCGCATG GAAGCACAGG TTCGCCAACG GCGGCGAACT GCGCACCCAG TTGCGCAGCG GCGTGTTCGA GCGGGCGCAA TGGAGCACGG CGGTGGGCGC CTGCGGCGCG CTTCCCACGG CGGCTGGAAC CTGCCCGGCC GGCACCCGGG CGGTCACGGC GCTCGATCCG TCGACCTTCC TCACGCGCAG CAGCCTCACG CCGCGCAAGG ACCGCTACAA GGGCACCTAC GCGCAGAGCG ACTACAGCCT GGCCTTCGAT GCGCTCGGCG TGAAGCATGA GCTGCTGGCC GGCATCGATG CCTCGAAGGA GGAGGCCGTT CGCTTCCAGA ACAACGGCAG CACGCTCGGC ATCCGTCCGC CCACGCGCGT CGGTACGCCC GACGACGGAG CTGGCCTGGT CGGCACTGGC CTGTCGCCGC AATGGCGCAA TTCGAGCAAC TACGACGCGA AGGCCTACGG CCTCTACGTG CAGGACCTGG TCCAGGTCGC GCCGCACTGG AAGGTGCTCG GCGGCATTCG CTACGACAGC TTCAAGGGTG ACTTCGAGCA GCTGAACTAC CGCACTGGCG CAGTGAGCAG CACGCCGCTG AGCGTCACCA GCACGCATTT GTCGAACTCG CCGTGGAGCT ACCGCGGCGG CGTGATGTAC CAGCCCTCCG ATTCCCAGTC GTACTACGTG TCGTACGGCA CCTCGTTCAA CACCTCGGCC GACACCTACC AGTACGTCAC GCCGCAGAAC GCCAACACGC CGCCCGAGAA GAGCCGCAAC CTCGAAGTGG GTGCCAAGCT CGACTGGCTG GACGGCGCGC TCTCCACGCG CGGCGCGATT TTCCGCACCG AGAAGTACAA CGAGCGCACC ACCGATGCCG ACTTTGCCGG CTCGGCCTAC ACGCTCTCGG GCAAGCGGCA TACCGCAGGC GTCGAGCTCG ACGTGGTCGG CCGCCTGGGC CGGCAGTGGG AGGTCTACGC TTCGTACACC TGGATGCCGG TCGCCAAGAT CGACCAGGCC GGCAGCGCGG CTGCGGCGCA GGCCTCGGTC GGCCAGCGCG TGGGTCTCAC GCCCAAGCAG TCGGGTGCGG TCTGGGTCAG CTACCAGGCA ACGCCGAAGC TGCGCGTCGC ACTGGGCGCG CATGGCGCGA CCGAGAACCG GCCGCTGACG GGCACCACCG GCGCCGCGTC GGCGACCGCC CGCGTGCCGG GCTATGTCGT GGCCGATGCA ATGCTCGAAT ACAAGTTCAC GCCGGACGTG TACGCGCAGA TCAACATCAA CAACCTCAGC AACAAGGCCT ACGGCGATCA GCTGTATCCG GGCTTTGCCA TCCTGGGCGC CAAGCGCCAG GTGCTCGGCA CGGTCGGCGT GCGCTTCTGA
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Protein sequence | MLPFGALMLA ASVSSWAQTP EAPVQGGTLG TVTVTEQAEV QGKDQVQTRK TNIGKGTQDI RDIPQSINVI TEKLIDDVKL DTLKDALHYS AGITFAATEN GTDQDIRLRG FPIASTGDLM IDGMRDPSQY DRDTFNLDRV EVMRGSASML FGRGSTGGVV NQVSKRPLLA DQTDVVGTLG SGGYFRTTAD FNVRTGETSA LRINAMYNKA DNGGAKIDKY GIAPSYSWGL GTADEFTVGL FHLKNNNVPM SAVRYVNGSL APVKPGNFYG TSADFVDGEA NYVHGAWKHR FANGGELRTQ LRSGVFERAQ WSTAVGACGA LPTAAGTCPA GTRAVTALDP STFLTRSSLT PRKDRYKGTY AQSDYSLAFD ALGVKHELLA GIDASKEEAV RFQNNGSTLG IRPPTRVGTP DDGAGLVGTG LSPQWRNSSN YDAKAYGLYV QDLVQVAPHW KVLGGIRYDS FKGDFEQLNY RTGAVSSTPL SVTSTHLSNS PWSYRGGVMY QPSDSQSYYV SYGTSFNTSA DTYQYVTPQN ANTPPEKSRN LEVGAKLDWL DGALSTRGAI FRTEKYNERT TDADFAGSAY TLSGKRHTAG VELDVVGRLG RQWEVYASYT WMPVAKIDQA GSAAAAQASV GQRVGLTPKQ SGAVWVSYQA TPKLRVALGA HGATENRPLT GTTGAASATA RVPGYVVADA MLEYKFTPDV YAQININNLS NKAYGDQLYP GFAILGAKRQ VLGTVGVRF
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