Gene Vapar_1769 details

Gene Information

• Locus tag: Vapar_1769
• ID: 7974511
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1905005
• End bp: 1905448
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644792368
• Product: thioesterase superfamily protein
• Protein accession: YP_002943685
• Protein GI: 239814775
• COG category: [R] General function prediction only
• COG ID: [COG0824] Predicted thioesterase
• TIGRFAM ID: [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.201031
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTCCG CCCCCAAACC CACGCCGCAT TCCCGAAGCA GCTACCGCGC GTTCCGCAGC 
ATTCCCACGC GCTGGGCCGA CAACGACATG TACGGCCATG TCAACAACGT CGTCTACTAC 
AGCTGGTTCG ACACGGCGGT GAATGCGCTG CTGATCGAAC GCGGCGCGCT CGACATCCAC 
CAGGGGCAGA CCATCGGCTT CGTGGTCGAG ACGCAATGCA ACTATTTCGC CCCGATCGCC 
TTTCCCCAGA CCGTGGAGGC CGGCATCTGC GTGGCCCAGG CCGGGCGGTC GAGCGTGCGC 
TACGAGATCG CGCTCTTTGC GGAAGGCTCG GACAGCGCGG CCGCGCAGGG CCACTTCGTG 
CACGTGTATG TGGACCGGGC CACGCAGCGG CCGGTGCCGC TTCCCGAGGC GCTGCAGCGC 
GTGGTCGATT CGCTGAAGGC CTGA 

 

Protein sequence

MSSAPKPTPH SRSSYRAFRS IPTRWADNDM YGHVNNVVYY SWFDTAVNAL LIERGALDIH 
QGQTIGFVVE TQCNYFAPIA FPQTVEAGIC VAQAGRSSVR YEIALFAEGS DSAAAQGHFV 
HVYVDRATQR PVPLPEALQR VVDSLKA