| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1674 |
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| Symbol | |
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| ID | 7974742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1805541 |
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| End bp | 1806479 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792273 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002943590 |
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| Protein GI | 239814680 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.247325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCAC CGCTCCTCAG CATTCCGATG CGCCATTTCC TCGAAGTGGC GCGCAGCGGC
TCGGTCAGCC AGGCCGCGGC GCGGCTGTTC GTGGCCTCGT CGGCGGTCAG CCGGCAGATT
GCCAAGCTTG AGGACAGCCT GGGCACGCCC CTGTTCGAGC GCCACGCCCG GGGCATGGCG
CTCACCGCGG CGGGCGAGCG GCTCGCGGCG CACCTGCGCA ATGCGCAGCT CGACATCGAG
CAGGTCATCG AGCAGGTGCG CGACCTCGGC GGCCGCAGCG CGCACCGCAT CCGCATGGCC
TGCACCGAAG GCTTTGCCGC GCACTTCATG CCGCAGGTCA TGCGCAGCTT CGAGTCGGCG
CATCCGGGCA CGCAGCTCGA GCTCCACGTG GGCTCGCCCG ATGGCGTGAG CGCGCTGCTC
GCGCGCGGCG AGGCCGACAT CGCGCTCAAG TACGTGGTGG CGCCGGAGCC CGGCCTGAAG
ATCGAGCACT CGGCCAATGC GCCGGTGTTC GCGGTGCTGC GCCCCGACCA TCCGCTGGCG
CGCCAGCGCG TGGTGTCCGT GGCCGACGCC GTGCGCTATC CGCTGGCCGT GGGCGACAAG
GGCGTGACCG CGCGGCAGCT GTTCGACCAG GCCTGCAGCC TGCAGGGCCT GCAGTACCGC
GCGATCTTCG TCAGCAATTT TTCATCGGTG CTGCTGCCGC TGTTGCGCAC GCCGGACGTG
ATGCTGTCGG GGCACCTCAC GGTCACGCAC CTGATCGATG CAGGCACGGT GGTGGCGCGC
CCGTTCGCCG AGGCGCCGCT GCAGCAGCGG CAGCTGCAGG TGCTGGCGCT CGAAGGCCGC
ACGCTCACGC CGCTGGCGCA GGCGTTCGTA CAGCACCTGG TGCATGCCAT TGCCAGCGCG
GGCCGGCGCA AGCTGGGCCG CGCGCGGTCG AGCGCCTGA
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| Protein sequence | MAPPLLSIPM RHFLEVARSG SVSQAAARLF VASSAVSRQI AKLEDSLGTP LFERHARGMA
LTAAGERLAA HLRNAQLDIE QVIEQVRDLG GRSAHRIRMA CTEGFAAHFM PQVMRSFESA
HPGTQLELHV GSPDGVSALL ARGEADIALK YVVAPEPGLK IEHSANAPVF AVLRPDHPLA
RQRVVSVADA VRYPLAVGDK GVTARQLFDQ ACSLQGLQYR AIFVSNFSSV LLPLLRTPDV
MLSGHLTVTH LIDAGTVVAR PFAEAPLQQR QLQVLALEGR TLTPLAQAFV QHLVHAIASA
GRRKLGRARS SA
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