| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1626 |
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| Symbol | |
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| ID | 7974694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1758933 |
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| End bp | 1759682 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792226 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002943543 |
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| Protein GI | 239814633 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.126651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCTGC AAGACATCCT CTATTCCCAG GGCTTCGGCA CCCGCCGCGT GTGTGCGGGC
CTGGTCCAGC AAGGCCACGT GAGCATTGCC GGCGCGGCCG TGACCGACCC CTTTGCCGAC
CTCGATCCCG AAGACCTGCT GTTCACCGTG CAGGGCACCG AATGGGCCTA CCACGAGAAG
GCCTACCTGA TGCTGCACAA GCCCGCGGGC ACCGAGTGCT CGCAGAAGCC CTCGACCTAC
CCGAGCATCT ACACGCTGCT GCCGTCGCCG CTGCGGCTTC GGCCCAACAA GGGCGCGGTG
CAGGGCGTGC AGGCCATCGG CCGGCTCGAC CAGGACACCA CCGGGCTGCT GCTGCTGACG
GACGACGGCC AGTTCATCCA CAAGATGGGT TCGCCCAAGC ACCATGTGCC CAAGGTCTAC
GAAGTCACGG CCAAGCACCC GGTGGACGCG GCCCAGATCG AGAAGCTGCT GGCCGGGGTG
GTGCTCGACG ACGACCCGAA GCCGGTGCGC GCGGCGGCCT GCGAATCCGA CAGCCCGCTG
CACCTGCGGC TGACGCTGAC CGAGGGCAAG TACCACCAGG TCAAGCGCAT GCTGGCGGCG
GTCGGCAACC GGGTCGAGGG GCTGCACCGC TCCCGCATCG GCGACCTGGC GCTGCCGGGC
GACCTGGCGG CCGGCCAGTG GCGCTGGCTC ACGGCCGAGC AGGTCGCGGC GCTGCGGGCA
CCCGCCAAGC CGCCGAAAAC GCCGAAATAA
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| Protein sequence | MHLQDILYSQ GFGTRRVCAG LVQQGHVSIA GAAVTDPFAD LDPEDLLFTV QGTEWAYHEK
AYLMLHKPAG TECSQKPSTY PSIYTLLPSP LRLRPNKGAV QGVQAIGRLD QDTTGLLLLT
DDGQFIHKMG SPKHHVPKVY EVTAKHPVDA AQIEKLLAGV VLDDDPKPVR AAACESDSPL
HLRLTLTEGK YHQVKRMLAA VGNRVEGLHR SRIGDLALPG DLAAGQWRWL TAEQVAALRA
PAKPPKTPK
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