Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1576 |
Symbol | |
ID | 7974805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1704701 |
End bp | 1706152 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644792176 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002943493 |
Protein GI | 239814583 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCTG CGGTGCATAG CGATATTCCC GCCCGTCTCG ACCGCCTGCC GTGGTCGCGC TGGCACTGGC GCGTGGTGGT TGCGCTCGGC GTGGCCTGGG TGCTCGACGG CCTCGAGGTG ACGCTTGTCG GCTCGATCGG CGCCGTGCTC GAGCGGCCCG ACACACTCGG GCTCAGCGCC GGCGAGATCG GCTGGTCGGG CTCGATCTAC ATCGCGGGCG CGGTGATCGG CGCCCTGCTC TTCGGCCGCC TGACCGACCG GCTCGGGCGC AAGAAGCTGT TCCTGGTCAC GCTGGTGGTC TACACCCTGG GCACGCTGGC CACCGCGTTC TCGCCGGACT TCGCTTTCTT TGCGCTGTGC CGCTTCATCA CGGGCCTGGG CATCGGCGGC GAATATGCGG CCATCAATTC CGCCATCGAC GAGCTGATTC CGGCGCGCGT GCGCGGCCGC GTCAATCTCG CAATCAACGG CAGCTTCTGG ATCGGCGCGG CGCTGGGGGC CGGGCTCAGC CTGGTGCTGC TCGATGCGCG CGTGATCGGT CCGGTGTGGG GCTGGCGCGC GGGTTTCGCG CTGGGCGCGG TGCTGGCGGT GGCCATCCTG CTGGTGCGGC GCCACGTGCC CGAAAGCCCG CGCTGGCTGA TGGCGCATGG CCGCGCCGAC GAGGCGCTGC GCATCGTCGA GACCATCGAG GCCGAGGTCC GCGCGCAGCA CGGCCCGCTG GCGCTGGCCG AGGGCCGCGT GGCCTACGGC GGCGGGCACC ACCGCAGCCC GTCGATGCGC GAGGTGGCGC ACGTGCTGCT GCGCCGCTAC CGCGCGCGCA GCGTGGTCGC GGTGGCGCTG ATGGTTTCGC AGGCCTTCTT CTACAACGCG ATCTTCTTCA CCTATGCGCT GGTGCTCACG CGCTTCTACG GCGTGGCCGA GGACAACGTG GCGCTCTACA TCTTTCCGTT CGCGCTTGGC AATGTGCTCG GGCCGCTGCT GCTGGGCCCG CTGTTCGACA GCGTGGGGCG GCGCAAGATG ATCGCGCTGA CCTACGTGCT CGCGGGCGTC GGGCTCGCGT TCACCGGCTG GGCCTTCATG ATGGGCTGGC TCGACGCGCG CAGCCAGGCG CTGTGCTGGT CGGCGGTGTT CTTCCTGGCC TCGGCCGCGG CGAGCTCGGC CTACCTCACG GTCAGCGAAG TGTTCCCGCT CGAGATGCGC GCCATGGCCA TCGCGATCTT CTACGCCATC GGCATGGGCG CGGGCGGCTT CGTGGCGCCG GTGCTGTTCG GCGTGCTGAT CGAGACCGGC AGCCGCGGCG CGGTGATGGT GGGCTACGCG ATCGGCGCCA CGCTGGTCAT CGTTGCGGGA CTGCTCGCGC TGCGCTATGC GGCCGATGCG GAGTGCAAGC CGCTCGAGGA AGTGGCGCCG CCGCTGTCGT CGGAGATCGG GAGCACCGGG ATCGGCGACT AG
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Protein sequence | MTAAVHSDIP ARLDRLPWSR WHWRVVVALG VAWVLDGLEV TLVGSIGAVL ERPDTLGLSA GEIGWSGSIY IAGAVIGALL FGRLTDRLGR KKLFLVTLVV YTLGTLATAF SPDFAFFALC RFITGLGIGG EYAAINSAID ELIPARVRGR VNLAINGSFW IGAALGAGLS LVLLDARVIG PVWGWRAGFA LGAVLAVAIL LVRRHVPESP RWLMAHGRAD EALRIVETIE AEVRAQHGPL ALAEGRVAYG GGHHRSPSMR EVAHVLLRRY RARSVVAVAL MVSQAFFYNA IFFTYALVLT RFYGVAEDNV ALYIFPFALG NVLGPLLLGP LFDSVGRRKM IALTYVLAGV GLAFTGWAFM MGWLDARSQA LCWSAVFFLA SAAASSAYLT VSEVFPLEMR AMAIAIFYAI GMGAGGFVAP VLFGVLIETG SRGAVMVGYA IGATLVIVAG LLALRYAADA ECKPLEEVAP PLSSEIGSTG IGD
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