Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1560 |
Symbol | |
ID | 7974789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1686533 |
End bp | 1687801 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792160 |
Product | glutamate carboxypeptidase |
Protein accession | YP_002943477 |
Protein GI | 239814567 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.400095 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCTGC ACTCGTCCTT CCTTGCCCTG CGGTCCGTGT CGCTGGCCTG CGGCCTCGCC CTTGGCGCCG CCGCCGCCGT GCACGCCGCG CCCGATGCCA AGCTGCTCGC CGCCGCCGAA AAGGCGCAGC CCGCGGTGAT CGACAACCTC AAGGAAATGG TGCTGATCGA ATCGGGCAGC CTCAACGTCG ACGGCCTGCT CAAGATGGCC GACGTGGTGG AAGCGCGCCT GAAGGCCGCG GGCTTCAAGA CCGAGCGGCG CAAGGCCACG GCGGGCGCGG GCGCCGACAT CGTCATCGGC ACCCTCAAGG GCACGGGCAA GCGCAGGATC ATGCTGCAGG GCCACATGGA CACGGTGTAC GCCGCCGGCA TCCTGAACAG CCAGCCCTAC AAGGTCGATG GCAACCGCAT CTACGGGCCG GGCATCGCGG ACGACAAGGG CGGGCTCGCG GTCATGATGG CTTCGCTGAA GATCCTGGCC GATGCGGGCT GGCGCGACTA CGACACGCTC ACGGTGCTCA TGAACCCCGA CGAGGAAGTG GGCTCGGTCG GCTCGGGCGA GCTCATCGCA ACCATGGCCG ACCAGCACGA CACGGTGCTG TCCTTCGAGC CCACCGCCGC CAAGTCGGTG GCCAAGGGCG AATCGCTGCT GCTGGGCGCG GCCGGCATCG CACAGGCCAC CCTCGACGTG AAGGGCCGCG CATCGCATGC GGGCGCCGCA CCCGAGCTGG GCCGCAACGC GCTGTACGAG CTGTCGTACC AGCTGCTGCA GACCCGCGAC GTGGCCAAGG ACATCCCCGG CGTGGCACTC AACTGGACCG TGGCGCGCGC CACCGGCCCG ATCAACCAGA TCACCGAGAA GGCGCAGGCG CTCGGCGACA TCCGCATCAC GCAGCCCGGC GCCGAGAAGA AGCTCGAAGC CGCGCTGCAG GCGAAGCTCG CGAGCGGCAA GCTGGTGCCC GACACCGAGA CCACGCTCAA GGTGGAAGTG GGCCGCCCGG CTTTCGTGGC GGGCGAGAAG GGCCGCGCGC TGGGCGAGAA GGCCCAGGCC ATCTACAAGG AGATCGACCG CGAGCTCGCG CTCACGCCCA TGACCGGCGG CGGCACCGAT GCGGGCTATG CGGGCCGCTC CGGCAAGGCC ACCGTGGTCG AGAGCTTCGG CCTCGCGGGC TTCGGCTATC ACGCACGCGA CGAATACATC GAGGTCGACT CGATCGTGCC GCGCCTCTAT CTCGTCACTC GGCTGCTGAC GGAAATCGGC AAGCAGTAA
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Protein sequence | MNLHSSFLAL RSVSLACGLA LGAAAAVHAA PDAKLLAAAE KAQPAVIDNL KEMVLIESGS LNVDGLLKMA DVVEARLKAA GFKTERRKAT AGAGADIVIG TLKGTGKRRI MLQGHMDTVY AAGILNSQPY KVDGNRIYGP GIADDKGGLA VMMASLKILA DAGWRDYDTL TVLMNPDEEV GSVGSGELIA TMADQHDTVL SFEPTAAKSV AKGESLLLGA AGIAQATLDV KGRASHAGAA PELGRNALYE LSYQLLQTRD VAKDIPGVAL NWTVARATGP INQITEKAQA LGDIRITQPG AEKKLEAALQ AKLASGKLVP DTETTLKVEV GRPAFVAGEK GRALGEKAQA IYKEIDRELA LTPMTGGGTD AGYAGRSGKA TVVESFGLAG FGYHARDEYI EVDSIVPRLY LVTRLLTEIG KQ
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