| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1546 |
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| Symbol | |
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| ID | 7974775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1671510 |
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| End bp | 1672397 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644792146 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002943463 |
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| Protein GI | 239814553 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCT CCGCATTGAT GGCTGCCGCT GCCGTGGTGC TGCTTACCGC CACGGGCGTC
CAGGCCGCCG ACACGCTGGC CAAGATCGCC GAGTCCGGCA AGATCACGCT CGCCTACCGC
GAGTCGTCGG TGCCCTTCAG CTACCTGGAC GGCCCCAACA AGCCGATCGG TTTCTCGGTC
GAACTCTCCA ACGCCGTGGT CGAGGCGGTG AAGAAGAAGC TCAACAAGCC CAGCCTGCAG
GTGCAGCTGA TGCCGGTGAC CTCGCAGAAC CGCATTCCAC TCATCACCAA CGGCACTGTC
GACCTGGAGT GCGGCTCCAC CACCAACAAC AGCGCGCGCG GCAAGGACGT GGCCTTTGCC
GTCAACCATT TCTACACCGG CACGCGCCTG CTGGTGAAGA AGTCCTCGAA GATCAAGGAC
TACGCCGACC TTGCCAAGAA GACGGTGGCC AGCACCACCG GCACCACCAA TGCGCTGGTC
ATGCGCAAGT ACAACACCGA GAAGAACCTC GACATGGACA TCGTGCTCGG CAAGGACCAC
GCCGATGCCT TCCTGCTCGT GGAAAGCGAC CGCGCCGTGG CGTTTGCAAT GGACGACATC
CTGCTGTTCG GCCTGATCGC CAACGCCAAG AACCCGGCCG ACTACGAGGT GGTGGGCGAG
CCGCTGCAGG TCGAGCCCTA TGCCTGCATG CTGCCCAAGG ACGACCCGGC CTTCAAGAAG
CTGGTGGACG ACACCTTCAT CGGCATGATG AAGAGCGGCG AATTCGAGAA GCTCTACAAC
AAGTGGTTCA TGTCGCCGAT CCCGCCGAAG AACGTGCCGC TGAACCTGCC CATGAGCCAG
CAGCTCAAGG ACAACATCAA GGCACCTTCC GACAAGCCGG CGACCTGA
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| Protein sequence | MKLSALMAAA AVVLLTATGV QAADTLAKIA ESGKITLAYR ESSVPFSYLD GPNKPIGFSV
ELSNAVVEAV KKKLNKPSLQ VQLMPVTSQN RIPLITNGTV DLECGSTTNN SARGKDVAFA
VNHFYTGTRL LVKKSSKIKD YADLAKKTVA STTGTTNALV MRKYNTEKNL DMDIVLGKDH
ADAFLLVESD RAVAFAMDDI LLFGLIANAK NPADYEVVGE PLQVEPYACM LPKDDPAFKK
LVDDTFIGMM KSGEFEKLYN KWFMSPIPPK NVPLNLPMSQ QLKDNIKAPS DKPAT
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