| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1438 |
|---|
| Symbol | |
|---|
| ID | 7971266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1562772 |
|---|
| End bp | 1563626 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644792036 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_002943355 |
|---|
| Protein GI | 239814445 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.161381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCCA TGAACACCAC CCGCATTCAC TCCACCGCTG CCGGCCAGCC CGGCGCGCGC
GATCCGTTCG GCGCCCACCT GCGGCACTGG CGCACCCGCC GGCGGCTCAG CCAGCTCGAC
CTGGCGCAGG AAGCCGAGGT CTCGACCCGC CACCTGAGCT ATGTGGAGAC GGGCCGCGCC
GCGCCCAGCC GCGAGATGGT GCTGCGCCTG GCCGAGCGGC TCGACGTGCC GCTGCGCGAG
CGCAATGCGC TGCTGGTGGC CGCGGGCTTC GCGCCGATGT ACCGGCAGCG CTCGCTCGAC
GACCCGGCGA TGGCCTCGGC CCGGCGCGCG GTGGACCTGG TGCTCAAGGG CCATGAGCCC
TTCCCCGCCC TCGCCGTCGA CCGGCACTGG AACCTGGTGG CGCACAACGC GCTGGTGCCG
ATGCTGATGG CCGGCGCCGC CCCCGAGCTG GTGAAGGCGC CCATCAACGT GCTTCGCCTG
AGCCTGCATC CCGAGGGCCT GGCTTCGCGC ATCGCCAATC TCGCGCAGTG GCGCGCCCAT
CTGCTCGAAC GGTTGCAGCA GCAGATCGCG GCCACCGGCG ACACCGTGCT GCAGGCCCTG
CACGACGAGC TCGAAGCCTA TCCCACGCCA CAGGTGAGCC ACGACACACC CGCTGCCGAC
ACGGAGCTGT CGGGCGTCGT GGTGCCCTTT CAGCTGGCCA CGCCGAACGG GGTGCTGAGC
TTCATCAGCA CCACCACCAT CTTCGGCACG CCGGTGGACG TCACTTTGCA GGAACTGGCG
GTGGAGTCCT TCTTTCCGGC CGATGCGCAG ACGGCCGCGG CGCTAACTGC GCTGGCGGCG
CAGCCGGCCG GTTGA
|
|---|
| Protein sequence | MRAMNTTRIH STAAGQPGAR DPFGAHLRHW RTRRRLSQLD LAQEAEVSTR HLSYVETGRA
APSREMVLRL AERLDVPLRE RNALLVAAGF APMYRQRSLD DPAMASARRA VDLVLKGHEP
FPALAVDRHW NLVAHNALVP MLMAGAAPEL VKAPINVLRL SLHPEGLASR IANLAQWRAH
LLERLQQQIA ATGDTVLQAL HDELEAYPTP QVSHDTPAAD TELSGVVVPF QLATPNGVLS
FISTTTIFGT PVDVTLQELA VESFFPADAQ TAAALTALAA QPAG
|
|---|
| |