Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1418 |
Symbol | |
ID | 7971246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1539280 |
End bp | 1542081 |
Gene Length | 2802 bp |
Protein Length | 933 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644792016 |
Product | putative transmembrane protein |
Protein accession | YP_002943335 |
Protein GI | 239814425 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3170] Tfp pilus assembly protein FimV |
TIGRFAM ID | [TIGR03504] FimV C-terminal domain [TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGAC ATCTGTTGCC CGCGGCCCGC CCATCGGCCG CTCGCCCCTC CCTGCCCTTG AACGGTCTTC GCCTCTCCGT TCTGGGCACG GCGGTTGCCG TGGTCCTGGG TATTGCAAGC ACCGACGCCA GCGCTTTCGC GCTCGGGCAG CTGAAGGTGC AATCGGCGCT GGGCGAACCG CTTCGCGCCG AAATCGACGT GACCGAAATG GCTGCCGCCG AAGCGGAAAG CCTGAAGATC AACGTCGCCA GCGCCGATGC CTTCAAGAAC GCGGGCGTGC CGTACAACGC TGCGCTCAGC GACGTCAAGG CCACGCTGCA GCGCCGCGCC GGCGGCCAGT ACGTGGTACG GCTCACCGGC AGCCGTCCGC TCAACGATCC CTTCGTCGAC CTGCTGCTCG AAGCCAATGG TTCCTCGGGT CGCATGGTGC GCGACTACAC CGTGCTGCTC GATCCGCCGG CCACCCGCCA GGCGGCGCCG AGCGCGCCCA TCGCGCCCGC CACGCCCCAG GTGAGCACGC CGCCCGCGGA GCGTCCGGCT GCCGCGGCAG CCCGCGCGCG CCGCGAGCGC GCGCCCGTCG CACCGGTCAC CGCTCCCACG GCACCAGCAG CGCCTGCCGC TGCCGCACCG CAGGCGCCCA GCGCCGCAGC ACCGGCCCGC CCGGCTGGCG GCGGCGAACA GGTCACGGTC CAGCGCGGCG ATACCGCCAG CAAGATCGCC GGGGCCCACA AGCCTGCCGA GGTTTCGCTC GACCAGATGC TGGTGGCAAT GCTGCTTGCC AATCCCGATG CATTCGTTGG CGGCAACGTC AACCGCATGA GGGCCGGCGC CGTGCTCGAC CTGCCGAGCG CCGCCGAAGC CAGCGCGATC CTGCCGTCGG AAGCGCGCCG CACCATCACC GCGCAGAGCC GCGACTTCGG CGCCTACCGC CAGCGCCTTG CCGAGAACGC ACCCACGTCC AACGTGGCCG CCGCCGACCG CAAGGCTTCG GGCAAGCTGC AGGCCAACGT CGAGGACCGC AATGCCGCGG CAAGCGCGCC CGACAAGCTG ACGATCTCGC AGGGCGGCGC AGCAGCCCGC GCCGCCGAAG AAAAGGTTGC ACAAGCCCGC CAGGCGCAGG ACAGCAACAA CCGCGTGGCC GAGCTCTCGA AGAACATCAA CGAACTGGCC AAGCTCAAGG CAGCCACCGG TTCGGCAGCA CCAGCCGCCG GCTCGGCGCC GGCACCCGCC CCGGCAGCGC CCGGCATTCC GGTTCCCAAC CCGGGTGTCG CCGCAACCAC GGCACCGGCC GCAGCGGCGC CTGCTGCCGC CGCACCCGCC CCGGCTGCTG CGCCTGCGGC CGCGTCCGCC GCCCCGGCCA CGACGCCTAC TGCCGCTTCG GCACCAGCGG CACCGGCAGC GACTCCTGCA CCAGCGGCAC CGGCAGCTGC CGCTCCCGCC GCTCCGGCGG CCGAGCCCGT GCCTGCTGCA ACTTCCGAGG CTGCGCCGGC CGCTCCCGCA GCGGCGGCAA GCGCCCCGGC CGCCGCACCG GCACCCAAGC CGGTCGTCAA GGCAGCGCCT CCGCCGCCCC CGGCCGAACG CGGCTTCTTC GAAGAGCTGA TGGACAACCC GCTGATGCTC GGCGGCGCGG CGCTGATCGC CTTGCTGGTC GGCTTCCTGC TTTACCGTGT CCTGGGCCGC CGCCGCGAAG AAATGAGCGA GAGCGTGTTC CTCGAAAGCC GCATTCCGAA GGATTCGTTC TTCGGCGCCA GCGGCGGCGA ATCGGTCGAC ACCAAGCAGC GTGGCGATTC CACCGTGTCG TCGCTGTCGT ACTCGCCGAG CCAGCTCGAT GCGGGCGATG TCGATCCCGT GGCCGAAGCC GACGTGTACC TGGCCTACGG CCGCGACCTG CAGGCCGAGG AAATCCTGCG CGAAGCCCTG CGCGTGAATC CGGACCGCAC GGCCATCCAC CTCAAGCTGC TCGAGATCCA TGCCAAGCGC CGCGACGTGC GGGCCTATGA AGGCCTTGCC ACCGAAGTGC ACAAGCTGAC CAACGGCACC GGTGCCGACT GGAACCGCGT GGTCGAGATG GGCAAGGATC TCGATCCGGG CAATCCGCTG TACGACTCGG GGGCGCCCCG CGTGAGCCCG GCCGAAAGCG CTGCCTTTGC AGGCGCCCTG GCCACGGCCG CGGCCAAACC TGCGCCGGCC CCGGTGGCGG CACCCGCCCC CGCGCCCGTC GCGGCTACGC CGGCCTTCGT GCCCTCGGTC GCGCCGCTGG ACTTCGATCT GGACCTGAGC CAGCCGCCGG CACCGGCGCC CGCGCCGGCC CCGGTGAGTG CCAGCCTGCC GAAGACGGCT TATGCGCCGC CCGCCGCCAG CAGCGCACCG CTGTCCAACG GCCATGCACA TGCGCCCACG GCACCGGTCG ACTTGGAAAA CGACTTCGAC ACCGCCCCCG GAGCGCTGTC GCCGATCACC CGCCCCGGCG CGCTCGGCGA AGCCGATGCC AACACCCGGC CGGCCGGCCT GCGCGGCAAC CTGCCAGCGG ACTCGGGCTT CATCGAGTTC GACATGAGTG CACTGGCCGG CCTGCCCGCC CGCCAGGTGG CCGGTACCGC CGATGCAGCA GCCAGGCCCG CCGAAGTCGC GCAGGACGAC GATGGCGACG AGAGCCCCCA TGCCGTCAAG CTGTCGCTGG CGCGCGAGCT GCAGGCGATC GGCGACGTCG AAGGCGCCCG CTCGCTGGTC GAGGAAGTCG AAGCCGAAAG TGCCGGCGAC CTCAAGTCGC AGGCGAGGCA ATTGCTCGCC GAGCTGCGCT GA
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Protein sequence | MTRHLLPAAR PSAARPSLPL NGLRLSVLGT AVAVVLGIAS TDASAFALGQ LKVQSALGEP LRAEIDVTEM AAAEAESLKI NVASADAFKN AGVPYNAALS DVKATLQRRA GGQYVVRLTG SRPLNDPFVD LLLEANGSSG RMVRDYTVLL DPPATRQAAP SAPIAPATPQ VSTPPAERPA AAAARARRER APVAPVTAPT APAAPAAAAP QAPSAAAPAR PAGGGEQVTV QRGDTASKIA GAHKPAEVSL DQMLVAMLLA NPDAFVGGNV NRMRAGAVLD LPSAAEASAI LPSEARRTIT AQSRDFGAYR QRLAENAPTS NVAAADRKAS GKLQANVEDR NAAASAPDKL TISQGGAAAR AAEEKVAQAR QAQDSNNRVA ELSKNINELA KLKAATGSAA PAAGSAPAPA PAAPGIPVPN PGVAATTAPA AAAPAAAAPA PAAAPAAASA APATTPTAAS APAAPAATPA PAAPAAAAPA APAAEPVPAA TSEAAPAAPA AAASAPAAAP APKPVVKAAP PPPPAERGFF EELMDNPLML GGAALIALLV GFLLYRVLGR RREEMSESVF LESRIPKDSF FGASGGESVD TKQRGDSTVS SLSYSPSQLD AGDVDPVAEA DVYLAYGRDL QAEEILREAL RVNPDRTAIH LKLLEIHAKR RDVRAYEGLA TEVHKLTNGT GADWNRVVEM GKDLDPGNPL YDSGAPRVSP AESAAFAGAL ATAAAKPAPA PVAAPAPAPV AATPAFVPSV APLDFDLDLS QPPAPAPAPA PVSASLPKTA YAPPAASSAP LSNGHAHAPT APVDLENDFD TAPGALSPIT RPGALGEADA NTRPAGLRGN LPADSGFIEF DMSALAGLPA RQVAGTADAA ARPAEVAQDD DGDESPHAVK LSLARELQAI GDVEGARSLV EEVEAESAGD LKSQARQLLA ELR
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