| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1415 |
|---|
| Symbol | |
|---|
| ID | 7971243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1536415 |
|---|
| End bp | 1537692 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792013 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_002943332 |
|---|
| Protein GI | 239814422 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCA ACTACCAGCA ACCCGACGCC ACCGGCCACT TCGGCAACTA CGGCGGCACC
TTCGCGAGCG AAACGCTCAC CCACGCGATC AACGAGCTGC GCGACGCCTA CGCGAAGTAC
AAGGACGATC CGGCCTTCCT CGCCGAATTC CACTACGAAC TCAAGCACTT CGTCGGCCGC
CCCTCGCCGG TCTACCACGC GGCGCGCACC AGCCGCGAGA TGGGCGGCGC GCAGATCTAC
CTGAAGCGCG AAGACTTGAA CCACACCGGC GCCCACAAGA TCAACAACGT GATCGGCCAG
GCGATGCTCG CGCGCCGCAT GGGCAAGCCC CGCGTGATCG CCGAAACCGG CGCCGGCCAG
CATGGCGTGG CCACCGCCAC CATCTGCGCG CGCTACGGCC TCGAATGCGT GGTCTACATG
GGCAGCCAGG ACGTGAAGCG CCAGAGCCCC AACGTCTACC GCATGAACCT GCTCGGCGCC
ACCGTGGTGC CGGTGGAGTC GGGCAGCAAG ACGCTGAAGG ACGCGCTCAA CGAGGCCATG
CGCGACTGGG TCACGAACGT GGAGAACACC TTCTACATCA TCGGCACCGT GGCCGGCCCG
CACCCCTACC CGACCATGGT GCGCGACTTC CAGAGCGTGA TCGGCACGGA GTGCATCGAC
CAGATGCCCG CCATGCTCGC GGCCCAGGGC ATCACCGGCG AAGCCGAGGG CCGGCAGCCC
GACGTGGTGG TGGCCTGCGT GGGCGGCGGC AGCAACGCGA TGGGCATCTT CCATCCCTAC
ATCCCGTTCG AAGGAACGCG CCTGATCGGC GTGGAGGCCG CGGGCGAAGG GCTCGACAGC
GGCAAGCACT CGGCATCCAT CCTGCGCGGC AGCCCCGGCG TGCTGCACGG CAACCGCACC
TACCTGCTGC AGAACGAGGA CGGCCAGGTG ACCGAAACGC ACAGCATCAG CGCCGGGCTC
GACTATCCCG GCGTGGGCCC CGAGCACGCC TACCTGGCCG ACATCGGCCG CGCCGAGTAC
GTCGGCATCA CCGACGCCGA GGCACTCGAA GCCTTTCACT ACCTGTGCCG CACCGAAGGC
ATCATTCCGG CCCTCGAATC GAGCCACGCC GTGGCCTACG CCATGAAACT CGCCAAGACC
ATGCGGCCGG ACCAGTCGAT CCTCGTGAAC CTCTCGGGCC GCGGCGACAA GGACATCGGC
ACCGTCGCCG ACCTGTCGGG CGTCGACTTC TACGACCGGC CCTCGATGCG CGGCCTGAGC
GTGAAGGGAG GCAAGTGA
|
|---|
| Protein sequence | MRTNYQQPDA TGHFGNYGGT FASETLTHAI NELRDAYAKY KDDPAFLAEF HYELKHFVGR
PSPVYHAART SREMGGAQIY LKREDLNHTG AHKINNVIGQ AMLARRMGKP RVIAETGAGQ
HGVATATICA RYGLECVVYM GSQDVKRQSP NVYRMNLLGA TVVPVESGSK TLKDALNEAM
RDWVTNVENT FYIIGTVAGP HPYPTMVRDF QSVIGTECID QMPAMLAAQG ITGEAEGRQP
DVVVACVGGG SNAMGIFHPY IPFEGTRLIG VEAAGEGLDS GKHSASILRG SPGVLHGNRT
YLLQNEDGQV TETHSISAGL DYPGVGPEHA YLADIGRAEY VGITDAEALE AFHYLCRTEG
IIPALESSHA VAYAMKLAKT MRPDQSILVN LSGRGDKDIG TVADLSGVDF YDRPSMRGLS
VKGGK
|
|---|
| |