Gene Vapar_1396 details

Gene Information

• Locus tag: Vapar_1396
• ID: 7971224
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1518006
• End bp: 1518674
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791994
• Product: anti sigma-E protein, RseA
• Protein accession: YP_002943313
• Protein GI: 239814403
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3073] Negative regulator of sigma E activity

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCAGA CGATGACGGT TCGTGAACAG GTGTCCGCAT TTGCGGACGG TCATTTGCAT 
GGCGAGGAGT TCGCGCGGGC CATCGACGCC GTCTGCGCGG AAGAAGACGC GCGCGGTGCC 
TGGCGCGCCT ATCACCTGGT GGGCGACATC CTGCGCTCGG GTGCCCATTC GCCCTGCAGC 
GACAGCAACG CATTCCTGGC CCGCTTCCAG CAGCGCCTGG CCGCGGAGCC CGCCATTGCG 
GCGCCGGCAC GGGTGCCGGC CGCTGAACCC GCGGTGCTGA CGGCGCGCCG CAGGGCCGAG 
GCAGCCAATG AGCCGGTGTT CCGCTGGAAG CTGGTGGCCG GCGCGGCGTC GCTGGTGGCG 
GTTGCCGCGA TCAGCTGGAC CCTGGTCGGG AACGGCATCG GCGTGCCTTC GCCGGGTGCC 
CAGATCGCAG CAGCGCAGCC GCAGCCGGCC GCCAATTCCG TGCTGGCCGC CGCGGCCGCC 
AACAGCCAGC TTCCGCCCAC CGCCGCGCTC ACGCCAACCC GCGTGATGGT CGGCAACGGC 
AGCCCGCAGG TCATGCTGCG CGATCCGCGG CTCGACCAAT TGCTCGAAGC GCACCAGCAA 
GCTGGCGGCG CATCGCAAAT GCCTTCGGGC TTCCTGCGCA ACGCGACCTT CGAAGGCCCT 
GCGCGCTGA 

 

Protein sequence

MNQTMTVREQ VSAFADGHLH GEEFARAIDA VCAEEDARGA WRAYHLVGDI LRSGAHSPCS 
DSNAFLARFQ QRLAAEPAIA APARVPAAEP AVLTARRRAE AANEPVFRWK LVAGAASLVA 
VAAISWTLVG NGIGVPSPGA QIAAAQPQPA ANSVLAAAAA NSQLPPTAAL TPTRVMVGNG 
SPQVMLRDPR LDQLLEAHQQ AGGASQMPSG FLRNATFEGP AR