| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1377 |
|---|
| Symbol | |
|---|
| ID | 7973058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1499340 |
|---|
| End bp | 1500623 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791975 |
|---|
| Product | HemY domain protein |
|---|
| Protein accession | YP_002943294 |
|---|
| Protein GI | 239814384 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3071] Uncharacterized enzyme of heme biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.256451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAGCCG CCCTCTGGCT CCTCGCGCTG TTCGCCGTCG CGGCGGCGGT GGCGCTGTTC
GCGGGCAACA ACCAGGGCAC GATCACCGTG TTCTGGCCGC CGTGGCGGGT CGACCTGTCG
CTGAACCTGG TGCTGGTCAT CCTGCTGGCC GCGTTCGTGC TGCTCCATCT TGCATTGCGC
GGCCTGGCGG CCTTGTTCTC GCTGCCGACC CAGGCGCGCC AATGGCGGCT GCAGCAAAAG
GAACGCATGC TGCACTCGGC CCTGCTGGAC GCCATGGTGC AGCTGCTGTC GGGCCGCTTC
TCGCGCGCGC GCAAGGCCGC ACAAGCCGCG CTGGTGCAGG AGAAAACGCT GGCTGCGCTC
GGCGCGAGCC TGCCGCAGTC CCAGCAGGTG CGCGTGCTGT CCCACCTGCT GGCTGCCGAG
AGCGCGCAGG CCCTGCAGGA CCGGCCCGCG CGCGACGCCC ACCTGCAGCA GGCGCTCAAC
GAAAGCGTCG AGCGCAACGT GCTCGCCAGT CCCGAAACGC GCGAGGGCGT GCAGCTGCGC
GCTGCGCGCT GGGCACTCGA AGACCACGAT CCCGCGGGAG CCCTCACCCG GCTCGAGGAG
CTTCCCCAAG GCGTGCAGCG GCGCACGCTC GCGCTGCGCA TCCGGCTGAA GGCGGCGCGC
CAGGACGGGC GCACGCTCGA AGCGCTGGAA ACGGCGCGCC TGCTCGCCAA GCACCGGGCC
TTTTCCGATG GCGCGGCGCA GAGCATCGTG CGCGGCCTCG CGACCGAGCT GCTGTCGGGC
GCGCATGACC CGGCACAGCT GCTTCGCGCC TGGGCCGAGC TCGACGCGGC CGAGCGCGAA
ATGCCCGAGG TCGCGATTCA CGCCGCCCAG CGCATGGTGG CGCTGCGCGG CGACCTGTCG
CTGGCGCGCG GCTGGCTGCT GCCGGCCTGG GAGCGCATGG TGTCGCAGCC CCGGGGCCTG
GGCGACACGC TGCGCGTCAA GATGGCGCGC GCCCTCGAGG CGGGGCTCGA CTCGGTGGAT
GCCGATTGGC TGGCCCGCAT CGAAACCGCG CAGCGCAACA ACCCGCGCGA CCCCAACCTG
CAGTACCTCG CGGGCATGGC CTGCATGAAG CGCCAGCTCT GGGGCAAGGC CCAGCAGCTG
CTGATGCAGG CCGGCCTGGG CCTGCAGGAC ACGGAGCTGT ACCGGCGTGC CTGGCTGGCA
CTGGCCGAAC TGGCCGAAAC GCGCGGCGAC GAAGAGCAGG CCGCAGCGGC CTGGAAGCGC
GCAGCGCAGA CCGAGAAGGC CTGA
|
|---|
| Protein sequence | MRAALWLLAL FAVAAAVALF AGNNQGTITV FWPPWRVDLS LNLVLVILLA AFVLLHLALR
GLAALFSLPT QARQWRLQQK ERMLHSALLD AMVQLLSGRF SRARKAAQAA LVQEKTLAAL
GASLPQSQQV RVLSHLLAAE SAQALQDRPA RDAHLQQALN ESVERNVLAS PETREGVQLR
AARWALEDHD PAGALTRLEE LPQGVQRRTL ALRIRLKAAR QDGRTLEALE TARLLAKHRA
FSDGAAQSIV RGLATELLSG AHDPAQLLRA WAELDAAERE MPEVAIHAAQ RMVALRGDLS
LARGWLLPAW ERMVSQPRGL GDTLRVKMAR ALEAGLDSVD ADWLARIETA QRNNPRDPNL
QYLAGMACMK RQLWGKAQQL LMQAGLGLQD TELYRRAWLA LAELAETRGD EEQAAAAWKR
AAQTEKA
|
|---|
| |