Gene Vapar_1355 details

Gene Information

• Locus tag: Vapar_1355
• ID: 7973036
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1469296
• End bp: 1475334
• Gene Length: 6039 bp
• Protein Length: 2012 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644791953
• Product: alpha-2-macroglobulin domain protein
• Protein accession: YP_002943272
• Protein GI: 239814362
• COG category: [R] General function prediction only
• COG ID: [COG2373] Large extracellular alpha-helical protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.402585
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAAAGAA CCATTCCAGC ATTGCTTCTG GCCGGCAGCG CCTTGCTCGC CGTCCCGGCC 
CTCGCCCTCC AGATCACCAG CCTGACACCG CAGGGCGAAG TGGCACGCGT GCGCCAGGTG 
GTCGCCAAGT TCGACCAGCC GGCCGTCAAC TTCGGCGACC CCAAGGCGCC CGCGCCGCTT 
GCCGTGAGCT GCACCGATGC GCAGGCCGGC AAGGGCACCG GCCGCTGGAC CGATGCAAAA 
GCCTGGGTCT ACGATTTCGA GAACGACCTG CCACCCGGCG TGCGCTGCAC CGTCACGCGG 
ATTGCCGGCT TCAAGCCCGC CTCGGGCGGG GAGCTGACCG GGCCGGAACG CTATCAATTC 
AATAGCGGCG GACCGTTCGT GCGCAACCAC ATGCCGGGCA GCTATGGGCG GATCGACGAG 
CAGCAGATGT TCGTGCTCGA GCTCAATGGC GCCGCCACCG TGGAGAGCGT GCGCCAGAAC 
GTCTGGTGCG CGGCCGACGG CATCGGCGAG CGCATTCCCG TGCGGCTGCT CGAAGGCGAG 
CAGCGTGCCG GGCTCCTCAA GGCCTTCGGC CGCGAGGCGG AAGCCGCCAA GGACCCGCTG 
CGCTTCATCG CGCTGCAATG CAACCGCACG CTCACGCCCG GCAGCAAGGT GCAGATCGTC 
TACGGCAAGG GCGTGGCCAC GCCGTCGGGC GTGGCCAACA ACGTGGAGCG GCGCCTGAGC 
TTCCAGGTGC GCGAACCCTT CGCGGTGTCT TTCAGCTGCG AGCGCGAGAA CGCCCAGGCC 
GCCTGCCTGC CGCTGCGGCC GATGCAGTTG CAGTTCAATG CGCCGGTCAC ACGCAAGATG 
GCTTCGCAGA TCCAGCTCAA GGGCGGCGGC AAGTCGATCG CCGCCACGCT CGAGAACGAC 
GGCGGCACGC CGAGCGAAGA CGACGTGGTC AGCGCCGCGA GCTTCAGCCC GCCGTTCGCC 
GAGGACACCA AGTTCAGCAT CGAGCTGCCC GCCAAGTTCG AGGACGCCTC GGGCCGGCCG 
CTGGCCTCGC CCGGCAGCTT TCCGCTGAAG GTGGCCACCG GCGCGATGCC GCCGCTGGCC 
AAGTTCGCGG CCTCGCCCTT CGGCGTGGTC GAGCGGCTGG CCGAGCCCGG CACGCCGGCC 
ATGATGCCGG TGACCGTGCG GCGCGTGGAA CCCGCGCTGA TGGTGCAGGC GCTGACGCCC 
GGCAAGGTCA GCGACATGAA CCCGAAGACC GACGCCGAGA TCATCGCGTG GTTCCGCAAG 
GTGCGCCGCT ACGACGAATA CACCGTGAGC CGCGAACAGG CGCGCAAGGA CGTCAAGGGC 
GCGCTGCCCG CCATCATCGA GACCAGCGAG CGCACCCATG TGCAAAGCCG CATGCTGTCG 
CTCCTGGCGG GCCAGCCGGG CGTGAAGGCG CTCGACATGC CCAAGGCCGA GAGCGGCGAT 
CCGCGGCCCT TCGAGGTCAT CGGCATTCCG CTGACGCCGG GCTTCCACGT GCTCGAGATC 
GCTTCGCAAA AGCTCGGCGA TGCGCTGCTC GACGAGCGCT ACGGCGCCAA CCGCACGATG 
TACGTGCGCA CCACCGCGCT GGCCACCAAC CTGGCGGTGC ACTTCAAGCT CGGCCGCGAG 
AACTCGATGG CCTGGGTCAC CACGCTCGAC AAGGGCAAGG TGGTGCCGAA CGCCGAGGTG 
CGCGTGTCCG ACTGCCGCGG CGTTGCCGTC GCATCGGGCA CCACCGACGC CAACGGCATC 
GTCAACCTCA CGGGCGTCGC GCCCGACGCG CCCAACTGCA ACGGCCCGGA CGAATACAAC 
GCGGGCGCCT GGTTCGTCAG CGCCCGCGCC AAGGACGACA AGGGCGTGGA AGACCTCGCC 
TTCACCTGGA GCGACTGGCA GCGCGGCATC GAGCCCTGGC GCTTCAACGT GCCCACCAGC 
CTGCAGGCCG AGCCCGACCG CGTGGCCCAC ACCATCTTCG ACCGCACCCT GCTGCGCGCC 
GGCGAGACGG TGTCGATGAA GCACCTGATC CGTACCCAGA CCAGCAAGGG CTTCGGCCTG 
CCCGAGAACC GGCCCGACAC GCTGGTCATC ACCCACACCG GCAGCGGCCA GCGCTTCACG 
CAGCCGCTGG CCTGGCGCAA GACGCCGACC GGCGGCCTGA GCGCGGAGAA CAGCTTTGCC 
ATTCCGCCGG CCGCCAAGCT CGGCCTGTAC GAAGTGATGC TGCGCAGCGG CAAGGGCAAG 
GACGCCAACA GCGGCAACGC CGAGGAAGAA GTCGAAGTCG ACGACGAAGG CGGCTACAAC 
CGCAGCTTTT CCACCGGCCA GTTCCGCGTC GAGGAATTCC GCCTGCCCGT GCTCGAAGGC 
CGCATTGCGC CCACCGACAA GAAGCCGCTG GTGAGCGTGG CCTCGGTACC GACCGACGTG 
CAGATCAACT ACGTCGCCGG CGGCGGCGCC GCCAACCTGC CGGTGCGCGT GTCGGCCATG 
GTGCGCGGCA AGAGCCTGAG TTTTTCCGAC CACGAGGCCT TCAGCTTCAG CCCGCCGCGC 
GTGCAGGCCG AGAGCTCGCA GGCGCCCGCC GCGGCGGCGG CCGACACCGC GGGCGCCGAG 
GAAGACATCA ACAGCGCCAG CGACACCCGC GTGATCGCCG ACAAGCTGCC GCTCACGCTC 
AACAAGGACG GCGCCGGCAA GCTCACGATC GACAAGGTGC CCAAGGTCAA GGCCGCGCGC 
GAGCTGCTGC TCGAAGCCAC CTATGCCGAC CCGAACGGCG AGGTGCAGAC CATCCGCAGC 
ACGCAGACGC TGTGGCCCGC CTCGGTGATC GCCGGCATCA AGACCGAAGG CTGGGTCTCG 
ACCAGCCAGA AGCTCAAGTA CCAGGCGCTC GCGCTCGACC TCTCGGGCAA GCCGCAGGCC 
GGCGTCACGC TCAACGTGCG CGCCGTGGCG CGCATCACCA CCACCAGCCG CAAGCGCATG 
GTGGGCGGCT TCTACACCTA CGACAACAAG ACCGAGACGA AAGACATCGG CACCGTCTGC 
AGCGGCAAGA GCGACGCGCG CGGACTGCTG CTGTGCGAAT CCGAGCTCAA GGAAGCCGGC 
GAGGTCGAGC TGGTGGCCAG CGCCACCGAC AGCGAAGGCC GCGACAGCCG CGCCGCCAGC 
TCGGTGTACG TGACGAAGCA GGGCGAACTC TGGTTCGGCG GCGAGGACAA CGACCGCATC 
GACGTGCTGC CCGAGAAGAA GAGCTACCAG CCCGGCGAGA TTGCCAAGTT CCAGGTGAGG 
AGCCCCTTCC GCTTTGCCAC TGCGCTGGTA TCGGTGGAAC GCGAAGGCAT CATCGAGACC 
CACGTGGTGC AGCTCGACGG CAAGGACCCG ACCGTGAGCC TGCAGGTCAG GCCCGAGTGG 
GGGCCGAACG CCTACGTGAG CGTGCTCGCG CTGCGCGGCC GTCTGCGCGA GGTGCCGTGG 
TACAGCTTCT TCACCTGGGG CTTCAAGGCG CCGCGCGAGT GGTGGACCGC CTTCTGGTAC 
GAAGGCAAGG AATACGTCGC GCCCACCGCA ATGGTCGACC TCAGCAAGCC CGCCTACCGC 
CTCGGCATGG CCGAGATCCG CGTCGGCACG CGCGCGCACC AGATCAACGT GACCGTCACC 
AGCGACAAGC CCAGCTACCC GGTGCGCAGC AAGGCGCAGA TCACCATCTC CGCCAAGCTG 
CCCGACGGCA AGCCCGCGGC GGGCGCCGAA GTGGCGCTGG CCGCGGTCGA CCAGGCGCTG 
CTGGAGCTGA TGCCCAACGA CAGCTGGAAC CTGCTCAACG CGATGCTGCA GCGGCGCAGC 
TGGGGCGTTT CCACCTCCAC CGCGCAGATG GAAATCGTCG GCCGGCGCCA CTACGGGCGC 
AAGGCCGTGC CCGCGGGCGG CGGCGGCGGC AAGGGCCAGA CGCGCGAGCT GCTCGACACC 
CTCCTGCTGT GGAACCCGAA GGTGGTGCTC GATGCCAACG GCCAGGCCGT GGTGACGGTG 
CCGCTCAATG ATGCGCTCAC CACTTTCAAG ATCGTGGCCG TGGCCGACTC GGGCACCAGC 
CTGTTCGGCA CCGGCCAGGC CAGCATCCAG GCCACGCAGG ACCTGCAGAT CATCAGCGGC 
CTGCCGCCGC TGGTGCGCGA GGACGACCAG TTCCGCGCCC AGATCACGCT GCGCAACACC 
ACGCAAAAGC CGATGAAGGT GGAGGCAGCG CCGCGCGCCA CGCTGCTCAC GCTCGCGCCG 
CAGACGGTGG ACATTCCGGC CGGCGAAGCG CGCGAAGTCG CATGGACCGT GACCGCACCC 
GCGCAGCTTG CGCAGACGCG TGCCGAAGCC ATCCTGTGGG AGATCGAGGC GAAAGACACC 
CTCGGCGGCG CACGCGATGC GCTCAAGGTG CGCCAGCGCA TCATCCCGTC GGTGCCGCTC 
ACGGTGCAGC AGGCCACGCT GGTGCAGATC GACGGACCCT TCACCATCGA CGTGGCACCG 
CCCGCAGACG CCCTGCCCGG CCGCGGCGGC CTGAAGCTGT CGCTGCAACC CAAGCTCGCC 
GAAGGCCTGC CGGGCGTGCG CGACTGGTTC GCCAACTACC CCTTCATCTG CCTCGAACAG 
AAGACCAGCA AGTCGGTCGG CCTGCGCGAC GCGAAGATGT GGCAGGGCGT GCTGGCGCAG 
CTGCCGACCT ACCTCGACAG CGACGGCCTG GCCAGCTACT TTCCGCCACG CGACGGCGAA 
TCGAACCGCG GCAGCGACAT CCTCACCTCG TACCTCTTGG CGGCCACGCA CGAGGCGGCG 
GCGCTGAACC CCGCCTTCGC GCTGCCCGAC GCGGCGCGCG CGCCGATGGA GTCGGGCCTC 
ATCGCCTTTG TCGAAGGCCG CATCCAGCGC GAGTTCTGGA GCCCGCGCAA GGACCTGGAC 
GTGCGCAAGC TCGCGGCGCT CGAGGCCCTG TCGCGCTACG GCACGGCCAA GGGCAGCATG 
CTCGGCAGCA TCACCATCGC GCCGAACCAG TGGCCCACCA GCGCGGTGAT CGACTGGCTC 
AACATCCTCA AGCGCGTGCA GGACGTGCCG CAGCGCCAGC AGCGGTTGGA GGAGGCCAAC 
AACGTGCTCA AGGCGCGCCT GTCCTACCAG GGCACCAAGC TCGTCTTCAG CACCGAGCAG 
GACGACTACT GGTGGTGGCT CATGACCAAC GGCGACGTCA ACACCGCGCG CCTCTTGCTC 
AGCGTGATGG ACGACCCGGC CTGGAAGGAC GACATCGGCA AACTGGCCAA CGGCTTCATC 
GGCCGCCAGC AGAACGGCGC CTGGCACACC ACCACCGCCA ACCTGTGGGG CGGGCTCGCG 
CTCGAGAAGT TCTCCAAGGT GTTCGAGAGC ACGCCGGTGG CCGGCGTCAC CGCCGCCACG 
CTCGGTGCCG TGAAGGCGCA GGTCGACTGG CGCAGCGTCG AGCGCGTGAA GACCACCGAC 
GCGGCCGGCG CGCCCAACCA GAGCACCTTC TTCGGCGCGC CCGCGTCGCC CGGCAACCTG 
AAGAACAACA GCATGTTCCT GCCCTGGGCC GCATCGCCCG CGGGCACGCC GGTGCGCGAC 
ACGCTGCTGG TCACGCAGCA GGGCAGCGGC AAGCCCTGGC TCACGATGCA GTCGATTGCC 
GCGGTGCAAT TGAAGGCGCC GTTCGCGGCC GGCTATGCCA TCAAGAAGAC CATCACGCCG 
GTCGAACAGG CCACCGCGGG CAAGTACACA CGGGGCGACG TGCTGCGCGT GACCGTCGAG 
GTGAACGCCA GCACCGACAT GACCTGGGTC GTGGTGAGCG ACCCGATCCC GGGCGGCGCC 
ACCATCCTGG GCACGGGCCT CGGCCGCGAC TCGCAGATCG CCACGCAGGG CGAGCGCAAG 
TCGGGCGCCG GCTGGCTGGC CTTCGAGGAG CGCAGCTTCG AGGCCTTCCG CAGCTACTAC 
GAGTACCTGC CCAAGGGCGT GGTGAAGATC GAATACACCG TGCGTCTCAA CAACGTGGGC 
GACTTCGCGC TGCCGCCGAG CCGCGTCGAG GCGATGTACG CGCCCGAGAT GTTCGGCGAG 
ACGCCGAATG CGCGCGTGAA GGTGGAGGCG GCGAAGTAA 

 

Protein sequence

MKRTIPALLL AGSALLAVPA LALQITSLTP QGEVARVRQV VAKFDQPAVN FGDPKAPAPL 
AVSCTDAQAG KGTGRWTDAK AWVYDFENDL PPGVRCTVTR IAGFKPASGG ELTGPERYQF 
NSGGPFVRNH MPGSYGRIDE QQMFVLELNG AATVESVRQN VWCAADGIGE RIPVRLLEGE 
QRAGLLKAFG REAEAAKDPL RFIALQCNRT LTPGSKVQIV YGKGVATPSG VANNVERRLS 
FQVREPFAVS FSCERENAQA ACLPLRPMQL QFNAPVTRKM ASQIQLKGGG KSIAATLEND 
GGTPSEDDVV SAASFSPPFA EDTKFSIELP AKFEDASGRP LASPGSFPLK VATGAMPPLA 
KFAASPFGVV ERLAEPGTPA MMPVTVRRVE PALMVQALTP GKVSDMNPKT DAEIIAWFRK 
VRRYDEYTVS REQARKDVKG ALPAIIETSE RTHVQSRMLS LLAGQPGVKA LDMPKAESGD 
PRPFEVIGIP LTPGFHVLEI ASQKLGDALL DERYGANRTM YVRTTALATN LAVHFKLGRE 
NSMAWVTTLD KGKVVPNAEV RVSDCRGVAV ASGTTDANGI VNLTGVAPDA PNCNGPDEYN 
AGAWFVSARA KDDKGVEDLA FTWSDWQRGI EPWRFNVPTS LQAEPDRVAH TIFDRTLLRA 
GETVSMKHLI RTQTSKGFGL PENRPDTLVI THTGSGQRFT QPLAWRKTPT GGLSAENSFA 
IPPAAKLGLY EVMLRSGKGK DANSGNAEEE VEVDDEGGYN RSFSTGQFRV EEFRLPVLEG 
RIAPTDKKPL VSVASVPTDV QINYVAGGGA ANLPVRVSAM VRGKSLSFSD HEAFSFSPPR 
VQAESSQAPA AAAADTAGAE EDINSASDTR VIADKLPLTL NKDGAGKLTI DKVPKVKAAR 
ELLLEATYAD PNGEVQTIRS TQTLWPASVI AGIKTEGWVS TSQKLKYQAL ALDLSGKPQA 
GVTLNVRAVA RITTTSRKRM VGGFYTYDNK TETKDIGTVC SGKSDARGLL LCESELKEAG 
EVELVASATD SEGRDSRAAS SVYVTKQGEL WFGGEDNDRI DVLPEKKSYQ PGEIAKFQVR 
SPFRFATALV SVEREGIIET HVVQLDGKDP TVSLQVRPEW GPNAYVSVLA LRGRLREVPW 
YSFFTWGFKA PREWWTAFWY EGKEYVAPTA MVDLSKPAYR LGMAEIRVGT RAHQINVTVT 
SDKPSYPVRS KAQITISAKL PDGKPAAGAE VALAAVDQAL LELMPNDSWN LLNAMLQRRS 
WGVSTSTAQM EIVGRRHYGR KAVPAGGGGG KGQTRELLDT LLLWNPKVVL DANGQAVVTV 
PLNDALTTFK IVAVADSGTS LFGTGQASIQ ATQDLQIISG LPPLVREDDQ FRAQITLRNT 
TQKPMKVEAA PRATLLTLAP QTVDIPAGEA REVAWTVTAP AQLAQTRAEA ILWEIEAKDT 
LGGARDALKV RQRIIPSVPL TVQQATLVQI DGPFTIDVAP PADALPGRGG LKLSLQPKLA 
EGLPGVRDWF ANYPFICLEQ KTSKSVGLRD AKMWQGVLAQ LPTYLDSDGL ASYFPPRDGE 
SNRGSDILTS YLLAATHEAA ALNPAFALPD AARAPMESGL IAFVEGRIQR EFWSPRKDLD 
VRKLAALEAL SRYGTAKGSM LGSITIAPNQ WPTSAVIDWL NILKRVQDVP QRQQRLEEAN 
NVLKARLSYQ GTKLVFSTEQ DDYWWWLMTN GDVNTARLLL SVMDDPAWKD DIGKLANGFI 
GRQQNGAWHT TTANLWGGLA LEKFSKVFES TPVAGVTAAT LGAVKAQVDW RSVERVKTTD 
AAGAPNQSTF FGAPASPGNL KNNSMFLPWA ASPAGTPVRD TLLVTQQGSG KPWLTMQSIA 
AVQLKAPFAA GYAIKKTITP VEQATAGKYT RGDVLRVTVE VNASTDMTWV VVSDPIPGGA 
TILGTGLGRD SQIATQGERK SGAGWLAFEE RSFEAFRSYY EYLPKGVVKI EYTVRLNNVG 
DFALPPSRVE AMYAPEMFGE TPNARVKVEA AK