| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1353 |
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| Symbol | |
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| ID | 7973034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1466927 |
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| End bp | 1468738 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791951 |
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| Product | secreted pectate lyase-family protein |
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| Protein accession | YP_002943270 |
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| Protein GI | 239814360 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.633554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCA GGAACTTCGT CATTTCGACA CTTTCTCCCT TGGCGCTGAG CGCGTGCGGC
GGCGGGGGAG ACGGCCCCGG CTTTCCGCCG TTCCCGGTGC CGCCGCCGGC ACCCGCGCCC
GAACCTCCGC CGAGCACCGA GGCACTGGCG CGCAAGGCGA TGCGGCGCGC CGCGGGCTTC
ATGGACGAGA CGGTGTCCTA TCGCGGCGGC TACGTCTGGG CCTACCTGCC CGACTTCTCC
ACCATCTGGG GCGAAATGGA GGCGCGCCGC ACCATGTGCT GGATCCAGCC GCCCGGCACG
CCGACCGCCG GCCATTGCAT GCTCGATGCC TACCATGCCA CGGGCGACGA ACTCTTCTAC
AGCGCCGCCG AGCGCACCGC GCTCGCGCTG GTCGAGGCGC AGCATCCGGC AGGCGGCTGG
AACTACATCC ACGACTTTGC CGGCGAAGCC TCGCTGCGCG AGTGGTACGC CACCGTGGGC
GCCAATGGCT GGCGGCTCGA GGAGTTCCAG CACTACTACG GCAACGCCAC CTTCGACGAT
GCGGGCACGG CGGTGTCGTC GCAGTTCCTC TTGCGCATGT ACCTGGAAAA GCGCGATGCG
CGCTTCCTGG CGGCGCTGCA GAAGGCCATC GGCTTCGTCA CGCAGGCGCA GTTCAGCTCC
GGCGTGGCCG ACGGCGGCTG GCCGCAGCGC TATCCGCCCT CGCCCGATGC GATCTCGTCG
ATGCCGCTGC CCAACCCGCA GCAGCTGCCT TCGGGCGCGA CCGCGGGCAT GGAAGACGGC
GACTACACGC GCCACGTCAC CTTCAACGAC GACGTGGCGG GCGAGAACAT CAAGTTCCTG
CTGATGTGCG TGGTGGCGCT CGGCGACCAG AGCCTGGTGC CGTACATCAC CCGCGCAATG
GACTGCCTGC GCCGCATGCA GCAGCCCGGG CCGCAGGCCG GCTGGGGCCT GCAGCACCTG
GCCACGGACC AGAACGGCCG CCTGGCCGGG GCGCCCGCCG GCGCGCGCAG CTACGAGCCG
CGGTCGCTGG CCACGCACAC GACGCAGACC AACGTGCAGC AGCTGTTCAA CTATTTCCGC
CTGACGGGCG ACCGCGGCTA CCTGGCGCGC GTGCCCGAGG CGCTCGACTG GCTGGACAGC
TGCAAGCTCA CCGACACCAT GATTGCGGAG AATCCGCTGC TCAAGGGCCG CACGCATCCC
ACTTTCGTGG AGCTCGGCAC CAACCAGCCG CGCTTCGTGC ACCGCTACGG TTCGAACATC
CACAACGGCG CCTACTACGT CGACCACGAC CATCGCAATA CGCCCAGCCA CTACTCGGCC
GGCCGCGCCA TCGACATCGC GGGCATGCGC CAGACCTACG CCCAGCTCAA CGGCATGAGC
GACGCCGCGG TCCAGCAGAT GGTGGCGGCT TCTCCGCTGC GCCATGGCGA GCAGCGGCCG
CTGCCCAAGT ATTTTTCGCT GCGCGAGGTG GACTTTGCCG ACCTGTTCGC CGACCGCGTG
ATGACAACCC CCGTGGTGAG CGCCGCCGAT GCCGCGGCCG TGATGGACAA GCTCGACCCC
AAGGGCTACT GGCTCGCGCC GCTGTCGGCC GTGACCAACC CCTACAAGGG CGATGGGCCT
TCCACGCCGT ACACGGGCGA TGCCTACCGC AGCAAGCATG TGGGCGACGT GTTCGACACC
TCGCCCTACG ACCCGGCGGA CCCGCCGCTG ATCGAGCCCT ACGTCAAGAA GGAGCAGCCG
CAGGGCATCA CGGTCGCGAG CTTCGTCGCC AACATGGGCA AGCTGATTGC ATTCGCCGCG
CCGGTCGCCT AA
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| Protein sequence | MKRRNFVIST LSPLALSACG GGGDGPGFPP FPVPPPAPAP EPPPSTEALA RKAMRRAAGF
MDETVSYRGG YVWAYLPDFS TIWGEMEARR TMCWIQPPGT PTAGHCMLDA YHATGDELFY
SAAERTALAL VEAQHPAGGW NYIHDFAGEA SLREWYATVG ANGWRLEEFQ HYYGNATFDD
AGTAVSSQFL LRMYLEKRDA RFLAALQKAI GFVTQAQFSS GVADGGWPQR YPPSPDAISS
MPLPNPQQLP SGATAGMEDG DYTRHVTFND DVAGENIKFL LMCVVALGDQ SLVPYITRAM
DCLRRMQQPG PQAGWGLQHL ATDQNGRLAG APAGARSYEP RSLATHTTQT NVQQLFNYFR
LTGDRGYLAR VPEALDWLDS CKLTDTMIAE NPLLKGRTHP TFVELGTNQP RFVHRYGSNI
HNGAYYVDHD HRNTPSHYSA GRAIDIAGMR QTYAQLNGMS DAAVQQMVAA SPLRHGEQRP
LPKYFSLREV DFADLFADRV MTTPVVSAAD AAAVMDKLDP KGYWLAPLSA VTNPYKGDGP
STPYTGDAYR SKHVGDVFDT SPYDPADPPL IEPYVKKEQP QGITVASFVA NMGKLIAFAA
PVA
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