Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1216 |
Symbol | |
ID | 7973386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1329034 |
End bp | 1329873 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644791813 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002943133 |
Protein GI | 239814223 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATGC CACGAATGCT CCGCCAGCTG ATGCACCGCC GCATCGTGAT GGTCTCCGCG CTGGTGCTGC TGGTCATTGC GGTGCTCGCC ATCGGCGCGC CGCTGTTCGC CTCCATCGAT CCCAATGACA CCGCCGTGCT GCAGCGCCTG AAGGGCCCGA GCGCCGAGCA CCTGCTGGGC ACCGACGAGC TCGGCCGCGA CATGTATTCG CGCATCGTCC ACGGCGCGCG CTACTCGCTG GCCATCGCGG CGCTCACTGC GCTGGGCGCG GTGGTTGCGG GCACGGTGCT GGGCCTCTTG GCCGGTTTCT TCCGACGGCT CGATACGCCG CTGATGCGCG TGGTCGACGC GATGATGTCC TTCCCCGACA TCCTGCTGGC GATTGCGCTG GTGGCGATCC TCGGGCCTTC GCTCATCAAC ACCGTGCTCG CGCTGGTGCT GGTCTACACG CCGCGCGTGG CACGGGTGGT GCGTGCCTCG ACGCTGGTGG TGCGCGAGTT GCTGTTCGTC GAGGCGGTGC GCGCGCTGGG TGTGCGCACC TCGCGCATCC TGTGGCGGCA CATATTGCCG AACCTGATGT CGCCGATCCT CGTGCAGGTG TCGTTCATCT TCGCCTACGC GATCCTGGCC GAGGCGGGGC TCTCGTTCCT GGGCGTGGGC GTGCCGCCCG AGATTCCGAC CTGGGGCACC ATGGTCGCTG GCAGCCAGCA GTACGCGCAC CAGGCCTTCT GGGTGGTGCT GTTCCCGGGG CTCGCGATCA TCTTCACCGC GCTCTCGCTG CAGCTGCTGG GCGACGGCGT GCGCGACCTG CTCGACCCCA AGCTCAAGAA GACCCTGTGA
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Protein sequence | MQMPRMLRQL MHRRIVMVSA LVLLVIAVLA IGAPLFASID PNDTAVLQRL KGPSAEHLLG TDELGRDMYS RIVHGARYSL AIAALTALGA VVAGTVLGLL AGFFRRLDTP LMRVVDAMMS FPDILLAIAL VAILGPSLIN TVLALVLVYT PRVARVVRAS TLVVRELLFV EAVRALGVRT SRILWRHILP NLMSPILVQV SFIFAYAILA EAGLSFLGVG VPPEIPTWGT MVAGSQQYAH QAFWVVLFPG LAIIFTALSL QLLGDGVRDL LDPKLKKTL
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