Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1091 |
Symbol | |
ID | 7969613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1195252 |
End bp | 1196838 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644791687 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_002943008 |
Protein GI | 239814098 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.264739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTTC AGAAGAAGGC GGCCGCGGTC GCAGTTTTGT GCGTGCTGGG CACCGCCAGC CTGGTGGCCG GCGCGCAGAC CATCCGCGTG GCGAACCAGG GGGACGCGCT GTCGCTCGAT CCGCACTCGC TCAATGAGTC GCTGCAGCTG AGCACCACCG CCAACGTCTA TGAAACGCTG GTCGGGCGCA ACAAGGACCT GAGCGTTGCG CCGCTGCTGG CGACCAGCTG GAAACAGACC TCGCCCACCG TGTGGCGCTT CGAACTGCGC AAGAACGTCC AGTTCCACGA CGGCACGCCC TTCACGGCCG ACGACGTGCT CTTCAGCTTC GCGCGCGCCT CGGGCGACGG CTCGGACATG AAGTCCAACA CCACCGACAT CAAGGAAGTG CGCAAGGTCG ACGCGCACAC CATCGAGATC GAGACCAAGG GCCCGTTCCC CATTCTTCCC GACGTCATCA CGCAGCTCAT GATCATGAGC AAGAAGTGGT GCGAGGAGAA CAAGGCCGTC ACGCCAGTCG ACCGGCGCAA GGGCATCGAG AACACCGCCT CGTTCAAGGC CAACGGCACC GGCCCGTTCC GCGTGCGCGA GCGCCAGCCT AACGTGCGCA CCGTCTTCAC GCGCAACCCG ACCTACTGGG GCAAGATCGA AGGCAACGCG CAGGAGATCA TCTTCACGCC GATCGCCAAC CCGGCCACGC GCGTCGCCGC GCTGATCTCC GGCGAGGTCG ACGTCATGGA GCCGGTGCCC GTGCAGGACA TCGCGCGCGT CAACGCCAGC CCGACGGCAC GCGTCATCTC CGGCCCCGAG CTGCGCACCA TCTTCCTGGG CATGGACCAG AAGCGCGACG AGCTGCTGTA CTCCAGCGTC AAGGGCAAGA ACCCGTTCAA GGACAAGCGC GTGCGCCAGG CCTTCTACCA GGCCATCGAC ATCGCCGGCA TCCAGCGCAC GGTGATGCGC GGCGCCTCGC GCCCCACCGC GCTGATGGTC GGCCCCGGCA TCAACGGCTG GAACGAAGCG CAGGACAAGC GCCTGCCCTA CGACGTCGAG GCCGCCAAGA AGCTGCTGGC CGAAGCCGGC TATCCGAACG GCTTCGAAGT GACGATGAAC TGCCCGAACG ACCGCTACGT GAACGACGGC CAGATCTGCC AGAGCGTGGC CTCCAACCTG GCGAAGATCG GCGTCAAGAT CAACCTCGCG GCCGAGACCA AGGGCACCTA CTTCCCGAAG GTGCTGCGCC GCGACACCAG CTTCTACATG CTGGGCTGGA CGCCCACCAC CTACGACTCG CACAACGCGC TCACGGCACT GATGGCCTGC CCCGACGACA AGACCGGCGC CGGCCAGTTC AACCTGGGCG CCTACTGCAA TCCCAAGGTC GACGAGCTGA CCAAGAAGAT CCAGTCGGAA ACCGACAAGC CCAAGCGCGA CGCGATGATC AAGGAAGCCT TCGACCTGCA CACCGCCGAC GTCGGCCACC TGCCGCTGCA CCAGCAGACG CTGGCCTGGG GCGTGAGCAA GAAGGTGGCG CTCACGCAGA TGGCCGACAA CTACATGCCC TTCAAGTGGA TGAGCATCAA GCCGTAA
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Protein sequence | MSFQKKAAAV AVLCVLGTAS LVAGAQTIRV ANQGDALSLD PHSLNESLQL STTANVYETL VGRNKDLSVA PLLATSWKQT SPTVWRFELR KNVQFHDGTP FTADDVLFSF ARASGDGSDM KSNTTDIKEV RKVDAHTIEI ETKGPFPILP DVITQLMIMS KKWCEENKAV TPVDRRKGIE NTASFKANGT GPFRVRERQP NVRTVFTRNP TYWGKIEGNA QEIIFTPIAN PATRVAALIS GEVDVMEPVP VQDIARVNAS PTARVISGPE LRTIFLGMDQ KRDELLYSSV KGKNPFKDKR VRQAFYQAID IAGIQRTVMR GASRPTALMV GPGINGWNEA QDKRLPYDVE AAKKLLAEAG YPNGFEVTMN CPNDRYVNDG QICQSVASNL AKIGVKINLA AETKGTYFPK VLRRDTSFYM LGWTPTTYDS HNALTALMAC PDDKTGAGQF NLGAYCNPKV DELTKKIQSE TDKPKRDAMI KEAFDLHTAD VGHLPLHQQT LAWGVSKKVA LTQMADNYMP FKWMSIKP
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