Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1089 |
Symbol | |
ID | 7969611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1192962 |
End bp | 1193942 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644791685 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002943006 |
Protein GI | 239814096 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.19101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGCTT TCGTCCTGCG CCGCCTGATC CAGGCCGTGA TCGTCATGAT CGCGGTCGCG TTCATCGCCT TTCTTCTCTT CCAATATGTG GGCGACCCCG TCGTCTTTCT GCTGGGCCAG GATGCCAAGC CCGAGCAGAT CCGCGAGCTG CGCGCCGCAT TGGGGCTCGA CCAGCCCTTC TTCGTGCAGT TCTGGCACTT TCTCGTCAAC GCGGCCCAGG GCGAGTTCGG CCTGAGCCTG CGCCAGGGCG CGAAGGTCTC GCGCCTCATC GGCGAGCGCT TTCCGGCCAC GCTCGAGCTC GCGCTGGTGG CGGCCGTGCT GGCGCTGTTC ATCGGCATTC CGATGGGCGT GTATACCGCG CTGCGCCGCG GCACTTTCCT GAGCCAGGTG TTCATGACCG TGTCGCTGCT CGGCGTGTCC CTGCCCACCT TCCTGATCGG CATCCTGCTG ATCCTGGTGT TTGCGGTGAT GCTGGGCTGG TTCCCGAGCT TCGGGCGCGG CGAGACCGTG CAGTTCGGCT GGTGGAGCAG CGGCCTGTTC CGGGCCGACG GATGGCATCA CATCATCCTG CCGGCCGTCA CGCTCGCGAT CTTCCAGCTG ACCCTGATCA TGCGGCTGGT GCGCGCCGAG ATGCTCGAGG TCCTGCGCAC CGACTACATC AAGTTTGCGC GCGCCCGGGG CCTCACGAAC CGCGCCATTC ATTTTGGCCA TGCGCTCAAG AACACGCTGG TGCCGGTGAT GACCATCACG GGCCTGCAGC TCGGCGGCCT CATCGCCTTT GCCATCATCA CCGAGTCGGT GTTCCAGTGG CCCGGCATGG GGCTCCTGTT CATCCAGGCC GTGACCTTTG CCGACGTGCC GGTGATGGCG GCCTACCTGT GCCTCATTGC CTTGATCTTC GTGGTGATCA ACCTGGTGGT CGACCTGCTG TACTTCGTGG TCGATCCGCG GCTGCGCGTG GGCAAGGCGG GAGGACATTG A
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Protein sequence | MIAFVLRRLI QAVIVMIAVA FIAFLLFQYV GDPVVFLLGQ DAKPEQIREL RAALGLDQPF FVQFWHFLVN AAQGEFGLSL RQGAKVSRLI GERFPATLEL ALVAAVLALF IGIPMGVYTA LRRGTFLSQV FMTVSLLGVS LPTFLIGILL ILVFAVMLGW FPSFGRGETV QFGWWSSGLF RADGWHHIIL PAVTLAIFQL TLIMRLVRAE MLEVLRTDYI KFARARGLTN RAIHFGHALK NTLVPVMTIT GLQLGGLIAF AIITESVFQW PGMGLLFIQA VTFADVPVMA AYLCLIALIF VVINLVVDLL YFVVDPRLRV GKAGGH
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