Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1040 |
Symbol | |
ID | 7972011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1137804 |
End bp | 1138742 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644791636 |
Product | SMP-30/Gluconolaconase/LRE domain protein |
Protein accession | YP_002942957 |
Protein GI | 239814047 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3386] Gluconolactonase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.367735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCAGA CCGGCCGCAC CGCATCCACT CCCACGCCCC TTGGCGTGCC ATCGATCCTC GGCCAGCCCG AGTGCCTGTG GCCCGCGGGC GCCACGCTCG GCGAGGGCAC GCTGTGGTCG CCGCGCGAAC GGGCGCTCTA CTGGATCGAC ATCCTCGAAA GCCGCCTGTA CCGGCTCGAC CCGGCCAGCG GCGCGCGGCG CAGCTGGCAG TTCGACGAGG AGATCACCGC GCTGGCCGAG CGCGCCAACG CGCCGGGGCT GATCGTCACC ATGCGCCGCG GCTTCGCCTT GTTCGATCCC GCGGTGGATG CGGCGCCGCG CTACCTGCAC CAGCCCGAGC CCGACCGGCC CGGCAACCGC TTCAACGACG GCAAGTGCGA CCGCCAGGGC CGCTTCTGGG GCGGCACCAT GGACTTCGAC TGCGTGGCAC CGACCGGCGC GCTCTACCGC TTCGACGCCG ACGGCCGCTG CACGCGCCAC GACGACGGCT TTGCCGTGAC CAACGGGCCG ACCTGGTCGC TCGACGAACG CACGATGTAC TTCAATGCCA CGGTGGAAGG CTGCGTCTAT GCCTACGACT TCGACAGCGC AGCCGGCACG GTGGGCAACA AGCGGGTGTG GCTTCGCTTT GCCGAGGGCG ATGGCCTGCC CGACGGCATG ACGACCGACG CGGCCGGCCG CCTCTGGATC GCGCGCTGGG GCGGCCACTG CGTGAGCTGC CACGACCCGC TGAGCGGCGC CGAGCTGTGC CGCATCGAAC TGCCCGCAAG CAACGTCACG GACTGCGCCT TCGGCGGCGA GGACCTGTGC ACGCTCTACA TCAGCACCGC GCGCAGCGGG CTCACGGCCG AACAGCTCGA GGCCGAGCCG CTGGCCGGCG GGTTGTTCGC GGTGCGCATC GGCAGCCCCG GCCTGCTTGC GGCCGAGTTC GGGGGCTAG
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Protein sequence | MTQTGRTAST PTPLGVPSIL GQPECLWPAG ATLGEGTLWS PRERALYWID ILESRLYRLD PASGARRSWQ FDEEITALAE RANAPGLIVT MRRGFALFDP AVDAAPRYLH QPEPDRPGNR FNDGKCDRQG RFWGGTMDFD CVAPTGALYR FDADGRCTRH DDGFAVTNGP TWSLDERTMY FNATVEGCVY AYDFDSAAGT VGNKRVWLRF AEGDGLPDGM TTDAAGRLWI ARWGGHCVSC HDPLSGAELC RIELPASNVT DCAFGGEDLC TLYISTARSG LTAEQLEAEP LAGGLFAVRI GSPGLLAAEF GG
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