Gene Vapar_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1022 
Symbol 
ID7971993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1116276 
End bp1116965 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content71% 
IMG OID644791618 
ProductPrecorrin-8X methylmutase CbiC/CobH 
Protein accessionYP_002942939 
Protein GI239814029 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2082] Precorrin isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.535258 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCGA CGCACGCCCC GGCGGCCAAC GTCGTCACCG AGCAGCTCAC CGCGGCGGGC 
CGCGCCATCG AGCACGACTC CTTCGCGGTG ATCGACCGCG AGGTGGCCTC GCATGCCTAC 
ACGGCCGACC AGTGGCCCGT GGTGCGCCGC ATGATCCATG CGAACGCCGA CTTCGACTTC 
AACGGCCTGA CCGACTTCCA CCCGGAGGCA GTCGACGCCG CCATTGCCGC CATCCGCTCG 
CGCGCCAGCC GCGTGCTGGC CGATGTCGAG ATGATCTGCG TCGGCCTCTC GGCGCCGCGC 
CTCGCGCACT TCGGCATGGG CACTCACCAG TTCATCAGCG ACCCGGACGT GATCTCGCAG 
GCGATGGCCG AAGGCACCAC GCGCGCGGTG CAGGCCATGC GCAAGGCGCA CCGGCTCGGG 
CTGGTCGACG GCGCGATCGT CGGCATCGGC AATGCACCGA CCGCGCTGAT CGAGATCGTG 
CGGCTGATCC GCGAAGAGGG CGCGCGCCCC GCGCTGGTGG TGGGCATGCC GGTGGGCTTC 
GTGTCGGCGG CCGAATCGAA GGACCTGGCC GCGCTCGAAG ACGAGGTGCC CTGGATCGTG 
ATCCGCGGGC GCAAGGGCGG CTCCACGCTG GTGGTGGCCG CGATCCACGC GCTGCTGGGC 
CTGGCCGAGG CGCGCGAACA CGCCGCATGA
 
Protein sequence
MKPTHAPAAN VVTEQLTAAG RAIEHDSFAV IDREVASHAY TADQWPVVRR MIHANADFDF 
NGLTDFHPEA VDAAIAAIRS RASRVLADVE MICVGLSAPR LAHFGMGTHQ FISDPDVISQ 
AMAEGTTRAV QAMRKAHRLG LVDGAIVGIG NAPTALIEIV RLIREEGARP ALVVGMPVGF 
VSAAESKDLA ALEDEVPWIV IRGRKGGSTL VVAAIHALLG LAEAREHAA