| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0853 |
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| Symbol | |
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| ID | 7972068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 940083 |
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| End bp | 941741 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791451 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002942772 |
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| Protein GI | 239813862 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCGTG CCGTTCCTGC CTCGATCCTG AAACCCCTGG CCGCCTGCGC GGTGCTCGCC
ACCCTGGCCT TCGCAACGCC GGCCCTGGCC CAGGAGAAGA CGCTGCGCAT CGCCATGACC
GCGGCCGACA TTCCGCGCAC GCTCGGCCAG CCCGATCAGG GCTTCGAGGG CAACCGCTTC
ACCGGCATCC CGATCTACGA CTCGCTCACC CAGTGGGACC TGTCCAAGGC CGACGCGCCG
AGCGTGCTGA TCCCGGCGCT GGCCAGTTCC TGGGCGGTCG ACGCCAAGGA CAAGACCAGG
TGGGTCTTCA AGCTGCGCCC CGGCGTCAAG TTCCATGACG GCTCGGCCTT CAATGCCGAT
GCGGTGGTGT GGAACGTGCA GAAGGTGCTC GACAAGGACG CGCCGCAGTT CGACCCCAGC
CAGGTCGGTG TGACCGCTTC GCGCATGCCC ACGCTGCGCA CCGCGCGCAA GATCGACGAC
ATGACGGTCG AGCTCACCAC CAGCGAGCCC GACGCCTTCC TGCCGATCAA CCTGAGCAAC
CTGTTCATGG CCTCGCCCGC GCAGTGGCAG AAGAAGTTCG ATGCCGCGGC CGGCGCCACG
CCCGCCGACA AGTCCAAGGC CGCATGGACC GCCTTCGCCG CCGACCCCGC AGGATCGGGC
CCGTTCAAGG TCACGCGCTT CGTGGCGCGC GAACGCCTGG AGCTGGCCGC CAACAAGACC
TACTGGGACG CGAAGCGCGT ACCCAAGATC GACAAGGTCG TGATGCTGCC GATGCCCGAG
GCCAATGCGC GCACCGCCGC GCTGCTGGGC GGCCAGGTCG ACTGGATCGA GGCGCCCGCG
CCCGATGCCA TGGCGCAGAT CACGCAGCGC GGCTTCAAGA TCTATTCCAA CGCGCAGCCG
CATGTGTGGC CGTGGCAGCT GTCGTTTGCC GAGGGCTCGC CCTGGCTCGA CAAGCGCGTG
CGCCAGGCCG CCAACCTGTG CATCGACCGC GGCGGCATGA AGCAGCTGCT CGGCGGCATG
ATGGCTGAGC CCAAGGGCAC GGTGCCGCCG GGCCATCCGT GGTTCGGCAC GCCCGCCTTC
GATATCCGCT ACGACGTGAA GGCCGCGCAG GCGCTGATGA CGCAGGCCGG CTACTCGGCG
GCCAAGCCGA TCAAGGTCAA GGTGCAGATC TCCGCCTCGG GCTCGGGCCA GATGCAGCCG
CTGCCGATGA ACGAGTTCGC GCAGCAGTCG CTCAAGCAGT GCTTCTTCGA CGTGCAGTTC
GACGTGATCG AATGGAACAC GCTCTTCACC AACTGGCGCA AGGGCTCGAA GGACCCGTCG
GCCAATGGCG CCAACGCGGT CAACATCAGC TTCGCGGCGA TGGACCCGTT CTTCGCGATG
GTGCGCTTCG TGAGCACCAA GGCCTTTCCG CCGGTGTCCA ACAACTGGGG CTACTACGGC
AACGCCGAAG TCGACAAGCT GGTGGCCGAT GCGCGCACCA GCTTCGACGA CAAGGCGCGC
GACGCTGCGC TGGCCAGGCT GCATACGCAC ATCGTGGACG ACGCGCCCTT CGTCTGGATC
GCGCACGACG TGGGGCCGCG CGCGATGTCG GCCAAGGTGA AGAACGTGGT GCAGCCGAAA
AGCTGGTTCA TCGACATCGC AACCATGACG ATGGACTGA
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| Protein sequence | MKRAVPASIL KPLAACAVLA TLAFATPALA QEKTLRIAMT AADIPRTLGQ PDQGFEGNRF
TGIPIYDSLT QWDLSKADAP SVLIPALASS WAVDAKDKTR WVFKLRPGVK FHDGSAFNAD
AVVWNVQKVL DKDAPQFDPS QVGVTASRMP TLRTARKIDD MTVELTTSEP DAFLPINLSN
LFMASPAQWQ KKFDAAAGAT PADKSKAAWT AFAADPAGSG PFKVTRFVAR ERLELAANKT
YWDAKRVPKI DKVVMLPMPE ANARTAALLG GQVDWIEAPA PDAMAQITQR GFKIYSNAQP
HVWPWQLSFA EGSPWLDKRV RQAANLCIDR GGMKQLLGGM MAEPKGTVPP GHPWFGTPAF
DIRYDVKAAQ ALMTQAGYSA AKPIKVKVQI SASGSGQMQP LPMNEFAQQS LKQCFFDVQF
DVIEWNTLFT NWRKGSKDPS ANGANAVNIS FAAMDPFFAM VRFVSTKAFP PVSNNWGYYG
NAEVDKLVAD ARTSFDDKAR DAALARLHTH IVDDAPFVWI AHDVGPRAMS AKVKNVVQPK
SWFIDIATMT MD
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