| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0563 |
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| Symbol | |
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| ID | 7972973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 621957 |
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| End bp | 623354 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791166 |
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| Product | transcriptional regulator, GntR family with aminotransferase domain |
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| Protein accession | YP_002942492 |
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| Protein GI | 239813582 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGA TCACCGCCCA CTGGCGCAAG CAGCTGCGCA ACACCGCCAA GCCGGCCTAC
CTGCTGCTGG CGGAATTGAT TGCCGACGAC ATCAAGACCG GCCGCCTCGC CGTGCGCGAC
CGGCTGCCCA CCCTGCGCGA GCTCGCGGCC GAGCTGGAGC TCAACTACAC GACGGTGGCA
CGCGGCTATG CCGAGGCGCG CAAGCGCGGC CTGATCGATT CGCGCGCCGG CACCGGCACC
TTCGTCCGCT CGGGCAGCCC GAGCCTGCGG CTGCGCGGCG GCAGCGGCGC CGAGATGACC
ATGAACATGC CGCCCGAGCC TGACGACCCG CACCTGATGG CGCGGCTGCA CGACAGCGCG
AGCCGCGCCT TCGCCGAGGC CAACCTGCAC GACCTGCTGC GCTACCAGGA CTTCGGCGGC
ACCGCGCACG ACCGCGAGGC CGCGATGCAC TGGCTGCGGC CCTTCGTGCC CGACGCGGGC
ATCGACCGCA TCCTCGTGTG CCCGGGCATC CACGGCGTGC TCACGGCGCT GTTCTCGCAG
CTCGCGCGGC CGGGCGAGCT GATCTGCGTG GAGTCGCTCA CCTATCCGGG CGTGAAGGCC
ATCGCGGCGC AGCTGGGCGT GCAGCTGCAT GCGCTGCAGC TCGATGAGGA CGGCCCCATT
GCCGATGCCT TCGAGCACGC CTGCAGGACG CTCAAGCCCA AGGCGCTCTA TTGCAACCCC
ACGCTGCTGA ATCCGACCGC GGGCACGGTG CCCCGCGCAC GGCGCGAGGC GCTGGCCGAC
GTGGCGCTGC GCTATGCGGT GCCGATCATC GAGGACGACG CCTACGGCAT GCTGCCGCGC
CAGACGCCGG CCGCGCTCGC CACGCTGGCG CCCGGGCTCA CCTACTACGT GAGCGGGTTC
TCCAAATGCT TTGGCGCGGG CCTGCGCAGC GCCTACGTGT GCTCGCCCAC CGTGGTCCAG
TCGCAGCGCC TGGCCGGCGC GATGCGCGCC ACCACCGTGA TGGCCTCGCC CATCACCAAT
GCATTGACCA CGCTGTGGGT CGAAGACGGC ACCGCCGAGG CCATGCTGCA GGCCGTGCGC
GGCGAATCGA TGGCGCGGCA GGCGCTGGCC ACGCGGCATC TCGGCGGCAG CGGGCTGCAG
GCGCATCCCG AGGGCTTCCA TGCCTGGCTG CCGCTCGCGC CAGGCTGGAG CCCGGTGGAG
TTTGCCTCCT ACCTGCGTAC GCAGAACGTT GGCGTGGTGG CGAGCGCGGC CTTTTCCACC
GATGGCGATC CGCCCGAGGC GGTGCGCATC TGCCTGGGCG GCCCGATGTC GCGCGAGCAG
TGCGACCAGG CGCTGCGGCT CATTGCCGAC ACGCTCGCGC ATCCGCTGCA TCCGCACGCC
ACGCTGCGCG GCGGCTGA
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| Protein sequence | MTTITAHWRK QLRNTAKPAY LLLAELIADD IKTGRLAVRD RLPTLRELAA ELELNYTTVA
RGYAEARKRG LIDSRAGTGT FVRSGSPSLR LRGGSGAEMT MNMPPEPDDP HLMARLHDSA
SRAFAEANLH DLLRYQDFGG TAHDREAAMH WLRPFVPDAG IDRILVCPGI HGVLTALFSQ
LARPGELICV ESLTYPGVKA IAAQLGVQLH ALQLDEDGPI ADAFEHACRT LKPKALYCNP
TLLNPTAGTV PRARREALAD VALRYAVPII EDDAYGMLPR QTPAALATLA PGLTYYVSGF
SKCFGAGLRS AYVCSPTVVQ SQRLAGAMRA TTVMASPITN ALTTLWVEDG TAEAMLQAVR
GESMARQALA TRHLGGSGLQ AHPEGFHAWL PLAPGWSPVE FASYLRTQNV GVVASAAFST
DGDPPEAVRI CLGGPMSREQ CDQALRLIAD TLAHPLHPHA TLRGG
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