Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0520 |
Symbol | |
ID | 7972930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 572719 |
End bp | 574323 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644791123 |
Product | 3D domain protein |
Protein accession | YP_002942449 |
Protein GI | 239813539 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2821] Membrane-bound lytic murein transglycosylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACGA CACTGTCGCC GGTTCTTTTC ATTTCCGCTC TGCGCTGGGC GGCCACCGCA GCAGCCATGC TTGCGGCGGG TTGCGCCAAC ACGCCGCCGA CGGCGAGCGC CGGCGCTTCG GACACGGCGG CCAGCGCGGC GGCCGCCGGC TCGACGACGG CGACGCTCCC ACCGCCGCGC CCCGCCGGCT CGAGCACGGC CGGCCAGGCG CGCACCTTCT CGACCCAGCT GGCCACCTAC ACCTCGGTCA GCTTCGATGC CGTGCCCGGA TGGGCGCGCG ACGACTTCTC CGAAAGCTGG CCCGCCTTCC TCGGCAGCTG CAAGGTGCTC ACCGGCCGCG GCGCCGAGTG GAAGGACGTG TGCGCGCGCG CCCTCCGGGT CGACAGCAAG AACAACAGCG CGATCCGCGC CTTCTTCGAG CAGGAGTTCT CGGCCTACCA GATCCGCGAC GACGACCGCA AGCCCGATGG CGTGGTCACC GGCTACTTCG AGCCCGAGAT CCCGGGCAGC CGGCAGTACG CGGCGCCGTT CATCTACCCG GTCTATGGCC AGCCCGAGGA CATGCTGTTT GCCGATGCGC GCAAGCTGCC GGCCGGCAAC GGCACGGTGG CGGCAAAGGT CGAGGGCCGC AACGTGGTGG TGCAGACCGG CCTCAGCACG CGCGACATGG GCGCGCCGGG GCTCTATGCG CTCGACCTCT CGGCCATCAC GCGCGACACG CTCGACCGCA AGGTGCGCCT GCGCATCGAG GGCAAGCAAC TGCTGCCCTA CTACACGCGC GAAGAGATCG AGACCAAGGG CGCGCCCAAT GCGAAGGTGC TGGCCTTCGT GAGCAGCGCC ACCGCGCTCT ACGAAATGCA GATCCAGGGT TCGGGCCGCA TCAAGCTGGC CAACGGCGAC ATCATCCGCG TGGCCTATGC CGAGCAGAAC GGCCAGCCCT TCCGCCCCAC GCTGGCGCAG GCGGCCAACG GCAAGCCGCG CAGCCCGGTC AAGGTGCGCG GCTCGTCGAT CGAACTGCAG CTCGACGACG GCGACGAGGA CGACGACGTT GGCGGCCCCG CGACCGGCAC CATCCGCACG CGCGGCTTCA CGCTTGCGCA GCCCACGGCC AGCGGCGCGG TGCTGGTGCC GGGGCGGCGC ACGGCCGGGC CGGTGGTCGG CTCGGGCATC AAGGACCCGA GCTACGTGTT CTTCAAGGAG TCGCCGTCGC CTTCGGGCGG GCCGGTGGGC GCCTTCGGCG TGCCGCTGTC GGCGGGCCGC TCGATCGCGG TGGACCCGCG CAGCACGCCG CTGGGCTACC CGGTGTTCGT GTCGACCCGC GCGCCCGGCA CCGGCGCGCC GATGCAGCGG CTGACCATTG CGCAGGACAC CGGCGGCGCG ATCCGCGGCG CGGTGCGGGC CGACTATTTC TTCGGCAACG GCCAGCAGGC CGCGACCAAC GCGCGCCGCA TGAAGGAGCG CGGCCAGCTC TGGATCTTGC TGCCGCGCGG CCTGGCGGTG GCCACGGCGG CGGTGTCCTC GGCCATCCGC ACGCGCGGCG GCCCGGCGGG CGCCGGCCTG CCGCAGTGCC TGGTGCCGAC CGAAGGCGTG TGCGTGGACG ACTGA
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Protein sequence | MNTTLSPVLF ISALRWAATA AAMLAAGCAN TPPTASAGAS DTAASAAAAG STTATLPPPR PAGSSTAGQA RTFSTQLATY TSVSFDAVPG WARDDFSESW PAFLGSCKVL TGRGAEWKDV CARALRVDSK NNSAIRAFFE QEFSAYQIRD DDRKPDGVVT GYFEPEIPGS RQYAAPFIYP VYGQPEDMLF ADARKLPAGN GTVAAKVEGR NVVVQTGLST RDMGAPGLYA LDLSAITRDT LDRKVRLRIE GKQLLPYYTR EEIETKGAPN AKVLAFVSSA TALYEMQIQG SGRIKLANGD IIRVAYAEQN GQPFRPTLAQ AANGKPRSPV KVRGSSIELQ LDDGDEDDDV GGPATGTIRT RGFTLAQPTA SGAVLVPGRR TAGPVVGSGI KDPSYVFFKE SPSPSGGPVG AFGVPLSAGR SIAVDPRSTP LGYPVFVSTR APGTGAPMQR LTIAQDTGGA IRGAVRADYF FGNGQQAATN ARRMKERGQL WILLPRGLAV ATAAVSSAIR TRGGPAGAGL PQCLVPTEGV CVDD
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