Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0517 |
Symbol | |
ID | 7972927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 569499 |
End bp | 570125 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791120 |
Product | type VI secretion-associated protein, BMA_A0400 family |
Protein accession | YP_002942446 |
Protein GI | 239813536 |
COG category | [S] Function unknown |
COG ID | [COG3913] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03373] type VI secretion-associated protein, BMA_A0400 family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGACG ACGCGGCTGT TTTTTCTGCA TTGCCCGGAT GGTTCGGCAA GCTGCCGGGC ATGGGCGACT TCGCGCACCG GCGCCTGCCG GAGTCGTTTC GCTCGGTGTG GGACCCGTGG CTGCAGCGCG GATTGGCGCG GCTGCGCGAC CGGCATGCGG ACTGGACTTC GCATTACCTC GAAGCGCCGG TGTGGTGCTT TGCGCTCGGG CCGCAGGTGG TTGGCGAAGG TGCATGGATC GGCGTGCTGA TGCCGTCGGT CGATGGGGTG GGGAGGTACT TTCCGTTCAC GCTGGCGGTG GGGCTCGATG CTTCTGCGGG CGGGGCGCTG CAGGGCGATG CACTGCAGGA TGCGCTGCGG TGGTGGGCGC GGGGGACGCG GGCTGCGCTC GAAGGGCTTG AAGGGGATCT GGATGCGCTG CGGTTTGATG CGGTGCTGGA GAGGGTGTTT GCTGCTGCCG GTGATCTCGA GGTGCGCGAG ATGGCAGTGG AGTCGCTTGC CTTGCCGGGG GTGGGGGAGT CTTTGTGGCT TGGCGATCCG GGGGCTGGTG ACGGGGCTCG GATGCTTGTT GCGGGGTTGC CTTTGGATGG TCGGTTTGAG GCTTTGTTTT TGGGGGGTGG GGAATGA
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Protein sequence | MSDDAAVFSA LPGWFGKLPG MGDFAHRRLP ESFRSVWDPW LQRGLARLRD RHADWTSHYL EAPVWCFALG PQVVGEGAWI GVLMPSVDGV GRYFPFTLAV GLDASAGGAL QGDALQDALR WWARGTRAAL EGLEGDLDAL RFDAVLERVF AAAGDLEVRE MAVESLALPG VGESLWLGDP GAGDGARMLV AGLPLDGRFE ALFLGGGE
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