Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0506 |
Symbol | |
ID | 7972916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 553942 |
End bp | 554721 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644791109 |
Product | glycosyl transferase family 2 |
Protein accession | YP_002942435 |
Protein GI | 239813525 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.220056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACGGCG CGGCGCTCAA GGTGGCCGTG GTCACCCCCT ACCACCGCGA GCCGGCCGCC GTGCTGCGCC GCTGCATGCA GAGCGTGCAT GCGCAGAGCC ATCCGCAGGT GGTGCACTAC ATGGTGGCGG ACGGCCTCCC GCAGGCCGGG CTGCTGGCCG AATGGCCGCA GGTGCGGCAC ATCGTGCTGC CGCAGGTCAA CGCCAACTTC GGCTGCACGC CGCGCGGCAT CGGCGCGTTG TGCGCGCTGG CCGACGGCGC CGACGTGGTG TGCTTCCTGG ACGCGGACAA CCTGTTCCTG CCCGGCCACG TCGCCTCGGT GGTGCAGGCC TACGCCGAGG CCCGGGAGCG GGGCCGGCCG GTCGATGCGG TGTTCTCTTC ACGGTACATG TTCCTGCCGG GCCACGAGCA CCTGCGCATC GTTCCGCCGG ACGAGGCGCC GGGCTCGGAC TTCGTGGACA CCAACTGCAT CAGCCTGGCC CGCTCGGCCG GGTTTCTCTG GGGCGCGTGG TCGCAGTTGC CGCGTTCGCT GACGCCCGTG TGCGACCGGG CGATGTGCTG GCTCATGCAG CACCACGGGC TGCGGGTGCG CTGGACCCGG CAGTGCACCG TGCTGTACGA ATCGCGCTGG CGCGCCACCT ATCTGCAGGC CGGCCTGCCG CCGCCCGAGG GGCTGCACGA CGAGCTGCTG CGTTCGGCCG GCGTCGGCCT CACGCCGGAA GAGCTCTGGG GCCTGCTGCG GGTGCAGTGG AGCTTCGATC CGCCGGCGCG GCGGGCGTGA
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Protein sequence | MNGAALKVAV VTPYHREPAA VLRRCMQSVH AQSHPQVVHY MVADGLPQAG LLAEWPQVRH IVLPQVNANF GCTPRGIGAL CALADGADVV CFLDADNLFL PGHVASVVQA YAEARERGRP VDAVFSSRYM FLPGHEHLRI VPPDEAPGSD FVDTNCISLA RSAGFLWGAW SQLPRSLTPV CDRAMCWLMQ HHGLRVRWTR QCTVLYESRW RATYLQAGLP PPEGLHDELL RSAGVGLTPE ELWGLLRVQW SFDPPARRA
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