Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0438 |
Symbol | |
ID | 7970179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 480137 |
End bp | 481510 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644791041 |
Product | hypothetical protein |
Protein accession | YP_002942367 |
Protein GI | 239813457 |
COG category | [S] Function unknown |
COG ID | [COG4307] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.627607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACGC CACCTGACCA TGCCAGCGCT CCCGAACCGG GCGCGCCCTC CCACCTTGCC TCCGAACTCG CGGCGCCCAC CGTGAGCCGC GCCTACCGCT GCCAGTGCGG CCGGCCTGTG TTCCTGCGCA ACAGCCAGTG CCTGGCCTGC CGCACGCCGC TCGGCTACGT GATCGAGCGC CTGGGCGTGG TGCCGCTGGC GCCGGTCGAG GCCGAAGACA AGGCCGAGGG CGGCGCAGCC GACGGCGCCG AGCCTGAAGA ACAAGAGCAA CTCTTCACCG TGTTCGGCAA CCCCGACGGC CGCACCTACC GCCGCTGCGC CAACCTCATG ACCGCCGCCA GCTGCAACTG GATGGTGCCG GCCCCGCGCG AGGGCGACGA CCCTTCGTTC AACACCGACG GCCTCGCGCC CGGCTACTGC CTGGCCTGCA GCGTCACCCG CACCATCCCC GATCTCTCGG TGGAGAGCAA CGGCGAACTC TGGCGCAAGC TCGAGCATGC GAAGCGCCGG CTCATCTCGC AGCTGCTCGC GCTCGGGCTG CCGGTGGTCA GCCGCCATGC CGATCCGGTG CACGGGCTGG CCTTCGACTT CCTCGGCAAC ATGCCGGGCG GCCCGCACGT GATGACCGGG CATGAACAGG GCGTGATCAC CCTCAACGCC GAAGAGGCCG AGGACGCCGT GCGCGAGCGC ATCCGCGCCG AAATGCGCGA GCCCTACCGG ACGCTGCTCG GGCATTTCCG CCACGAGGTC GGCCACTACT ACTGGGACCT GCTGGTGCAG CCCACGCCCT GGCTCGACGG GTTCCGCGCG CTCTTCGGCG ACGAGCGCGC CGACTACGCC GCGGCGCTCC AGCAGCACTA CGAACAGGGC CCGCCGCCCG ACTGGGCCAA CCGCTTCGTG AGCAGCTACG CGAGCATGCA TCCCTGGGAG GACTGGGCCG AGACCTGGGC CCACTACCTG CACATGGCCG ACACCGCCGA CACGGCGATG AGCTTTGGCG TGGACGCCAC CAACGTCGAG CTTGCGACCG ACCTGTTCAC CGCGGAAGAC CTCTGGCAGC CCGAGCATCC CGGCGCCGCC AAGTTCCTGG ACTTTCTCAA CGGCTGGGTG CTGCTCACCA ACGTGCTCAA CGAACTTTCG CGCAGCATGG GCCAGCCCGA CTACTACCCC TTCGTGCTGC CGCGCGTGGC CGTCGGCAAG CTGCAGTTCA TCCACTGCGT GATCACGCAG CAGCGCGACC GCGGCATGTC CGCAGCCGCG TCGCCCGGCG TGCCGCTGCC GCCGGAGGCA AAAGCCCCCG CAGCTGCTTC CCAAGCGGCG CCCGCGCCAG TACCGCAGGC CCAGAACCAG CAGCAGGGCG CCGCTCAGTC CTGA
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Protein sequence | MNTPPDHASA PEPGAPSHLA SELAAPTVSR AYRCQCGRPV FLRNSQCLAC RTPLGYVIER LGVVPLAPVE AEDKAEGGAA DGAEPEEQEQ LFTVFGNPDG RTYRRCANLM TAASCNWMVP APREGDDPSF NTDGLAPGYC LACSVTRTIP DLSVESNGEL WRKLEHAKRR LISQLLALGL PVVSRHADPV HGLAFDFLGN MPGGPHVMTG HEQGVITLNA EEAEDAVRER IRAEMREPYR TLLGHFRHEV GHYYWDLLVQ PTPWLDGFRA LFGDERADYA AALQQHYEQG PPPDWANRFV SSYASMHPWE DWAETWAHYL HMADTADTAM SFGVDATNVE LATDLFTAED LWQPEHPGAA KFLDFLNGWV LLTNVLNELS RSMGQPDYYP FVLPRVAVGK LQFIHCVITQ QRDRGMSAAA SPGVPLPPEA KAPAAASQAA PAPVPQAQNQ QQGAAQS
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