| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0416 |
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| Symbol | |
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| ID | 7970157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 452326 |
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| End bp | 453999 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791019 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_002942345 |
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| Protein GI | 239813435 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAGCA ACAACAGCAG CAATGGCGAA TGGTGGCGCG GCGCGGTGAT CTACCAGATC
TACCCGCGCA GCTTCATGGA CAGCAACGGC GACGGCATCG GCGACCTGCC CGGCATCACC
TCGCGGCTCG ATCATGTGGC GAGCCTGGGG GTCGATGCGA TCTGGGTGTC GCCCTTCTTC
CGCTCGCCGA TGAAGGACTT CGGCTACGAC GTGGCCGACT ACCGCGCGGT CGATCCGATC
TTCGGCACGC TGGCCGATTT CGACGAGATG CTGGCGCGCG CCCATGCGCT CGGCCTCAAG
ATCATCATCG ACCAGGTGCT CTCGCACACC TCCGACCAGC ACGCCTGGTT CGCCGAAAGC
CGCGCGAGCC GCGACAACTC CAAGGCCGAC TGGTACGTGT GGGCCGACCC GCGGCCCGAC
GGCACGCCGC CCAACAACTG GCTCTCCGTC TTCGGCGGGC CGGCCTGGCA GTGGGATTCG
CGCCGCCGCC AGTACTACCT GCACAGCTTC CTCCAGGAGC AGCCCGACCT GAACTTCCAT
TGCGCCGAGG TGCAGCAAGC GCTGCTGGGC GAAGTGCGCT TCTGGTGCGA GCGCGGCGTG
GACGGCTTCC GCTTCGATGC CTGCAACCAC CAGTTCCACG ATGCGCTGCT GCGCGACAAC
CCGCCAGCGA GCGCCGCCTC GCTGGACGAG GTGAGCACGG TGCGGGCCGA CAACCCCTAT
GCCATGCAGC AGCACCTCTA CGACAAGAGC CAGATGGAGA ACCTGCGCTT CCTCGAAAGC
CTGCGCGGGC TGCTCGACGA CTATGGCGCG GTCGCGCTCG GCGAGGTCGG CGACGAGAAC
GCGCCGCCCG TCATGGCGCA GTACACCGAA CTGGGCAAGC GCCTGCACCT GGCCTACAGC
TTCAGCCTGC TGACGGCCGA GCACAGCGCC AGGCACCTGC GCCACCAGGT CGAGACGCTC
GACCAGGCGC TCGCGCCGAC CGGCGGCTGG GGCTGCTGGG CCGTCTCCAA CCACGACGTG
CCGCGCGTGG CCACGCGCTG GAGCGGCGGC GGCCCGGAAG ACACGCGGCG CGACCGGCTC
TGGCTCGCGC TGCTGCTCGC GCTGCGCGGC AGCGCCAGCA TCTACCAGGG CGAAGAGCTC
GGCCTGCCCG AGGCCGAGGT GCCGTTCGAG CTGCTGCAGG ACCCCTACGG CCGCGCCTTC
TGGCCCGAAT TCAAGGGCCG CGACGGCTGC CGCACGCCCA TGCCCTGGAA GGCCGACGAA
TTGCACGCCG GCTTCACCAC CGGCGGGCCC TGGTTGCCGG TCTACGGCCG CCACCTGCCG
CTGGCGGTCG ACCGCCAGTC CACCGATCCA GATTCCATGC TCGCATTCAG CCGCGCGCTG
CTGCGCTGGC GCCGCGCCCA GCCGCTGCTG CGCACCGGCA GCATCGCCTT CATCGATGCA
CCGGAGCCGG TGCTGTGGTT CGAGCGGCGC GAAGGGAACC AATCGCTGCA GGCCGTCTTC
AACCTGGGAG GCGAGTCGGT GTCCATCGCG CTGCACGGGG CGCTCGAGCC GCTCGCGGGG
CATCCGCTGG CATCGTCGTC GACCCTGCAG GCCGGCGCTG AAAGGCGCAT GCTGAGGCTG
GCGCCCTACG GCGTCTTTTT CGGCCGCCCC GCCGGCGAAG AAGAACCGAT GTGA
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| Protein sequence | MRSNNSSNGE WWRGAVIYQI YPRSFMDSNG DGIGDLPGIT SRLDHVASLG VDAIWVSPFF
RSPMKDFGYD VADYRAVDPI FGTLADFDEM LARAHALGLK IIIDQVLSHT SDQHAWFAES
RASRDNSKAD WYVWADPRPD GTPPNNWLSV FGGPAWQWDS RRRQYYLHSF LQEQPDLNFH
CAEVQQALLG EVRFWCERGV DGFRFDACNH QFHDALLRDN PPASAASLDE VSTVRADNPY
AMQQHLYDKS QMENLRFLES LRGLLDDYGA VALGEVGDEN APPVMAQYTE LGKRLHLAYS
FSLLTAEHSA RHLRHQVETL DQALAPTGGW GCWAVSNHDV PRVATRWSGG GPEDTRRDRL
WLALLLALRG SASIYQGEEL GLPEAEVPFE LLQDPYGRAF WPEFKGRDGC RTPMPWKADE
LHAGFTTGGP WLPVYGRHLP LAVDRQSTDP DSMLAFSRAL LRWRRAQPLL RTGSIAFIDA
PEPVLWFERR EGNQSLQAVF NLGGESVSIA LHGALEPLAG HPLASSSTLQ AGAERRMLRL
APYGVFFGRP AGEEEPM
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