Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0390 |
Symbol | |
ID | 7973534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 421232 |
End bp | 421945 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644790993 |
Product | two component transcriptional regulator, winged helix family |
Protein accession | YP_002942319 |
Protein GI | 239813409 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.708283 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTATTG CAGTACTTGA TCACGAGCCC GATCAGCTTC GGCTGATCGC CGAGGCGATG TCGGGGCTCG GCCACGAATG TCACTCGTAC ACCGAAGGGC GTCCCTTGCT CCAGGCGCTG CGCCGGCAAA CCTTCGATCT TCTGATCCTC GAATGGAACC CGCCGGACAT GCGCGGCCTC GAGCTCGTGA AGACCGCGCG CAACGAGCTG CGAAGCCGCG CGCCCATTCT TTTCGTGACC ACCACGCGCG ACGAGACCGC CGTGGTCGAA GGGCTCAATG CGGGCGCCGA CGATTTCATG GTCGCGCCGG TGCGCGCCAC CGAGCTCGAG GCCCGGGTCA ATGCGCTGCT GCGCCGGTCC TATCCCGCGC AGCACGAGAC CGAGCTGGTG TTCGGCCCTT ATCACTTCTA TCCGCCCGCG CGCGTCCTCA AGGTGAATGG CACGCCCGTC GAGCTGAAGA ACCGCGAATA CGCGCTCGCG CTGTTCCTGT TCCAGAACCT CGGCCGGCTG CTGTCGCGCG AGCACCTGCA CGAGGCGGTG TGGGGCGTTG GCACGGCGGC GCTGTCGCGG TCGCTGGACA CCCACATCTC CCGCCTGCGG ACCAAGCTGG GCCTCGGGCC CGCGAGCGGC TTCCTGCTGC TGGCCATCTA TGGGCTGGGC TACCGGCTCG AAGTGGTCGA CGCCAGCACG CATCCCGACA GCCTCGCGCG CTGA
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Protein sequence | MRIAVLDHEP DQLRLIAEAM SGLGHECHSY TEGRPLLQAL RRQTFDLLIL EWNPPDMRGL ELVKTARNEL RSRAPILFVT TTRDETAVVE GLNAGADDFM VAPVRATELE ARVNALLRRS YPAQHETELV FGPYHFYPPA RVLKVNGTPV ELKNREYALA LFLFQNLGRL LSREHLHEAV WGVGTAALSR SLDTHISRLR TKLGLGPASG FLLLAIYGLG YRLEVVDAST HPDSLAR
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