| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0249 |
|---|
| Symbol | |
|---|
| ID | 7972598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 267179 |
|---|
| End bp | 268762 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644790852 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002942178 |
|---|
| Protein GI | 239813268 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACAC GCAACCCCGT CGAGAAACGC ATGGCCCAGC TGCACGACCT GTGGTGGGAG
CGCACCGATG ACCCGGCGCT GCGCGCCATC GTGCTGCGCG CGCCGCCCGA CTCGCAGCGC
ATGCTGGAGG CCTTCTTCAC GCTCCAGATG GTCGACAGCG AATACAGCAC GCCCGATCTC
TTCCTGCGGC TGGACACGGC CTTCGAGACC GGCTTTCGCT ACAGCCGCGA ACTGCGGCAG
CAGCTGATCG ACACGTACCG GCACAACCGG CCGCAGCTCG TGAAGCAGGG TGTCTCGGCC
AGCTGGGACG AAGAGGGCCA GCCCGGCTGG GACAGCGCCG CCGGCTTCGT GCAAGCCGGC
TGCTCGCTGG CGCGGCACCT GCGCTGCCAG CGCATGTCGG TCGTGCTGCA GCCCGCCAGC
GTGAGCGACG CGGACTGCTT CGAGCGCTGG TTCGATGCGG CAATGCAGAC GCCCATGCCG
CCGCAGGAGG CCGGCCTGCT GCGGCTGGTG CTGGTGGACG ACAGCGACTC GCGCGCCTGG
CAGCCGCTGG TGGAGCGGCA TGCGGGCGCG ATGCGCGTGG TCGATGCGCC GCTGGACATC
CTCGAGGCCG CGCGCGAGAT CGCCGCCCAG AGCGGCGGCG GGAGCAGCGG CGCGGCCCTC
TTCCGCCAGC TCTATGCCGA CATGCTGTCG CTGCTGCGCC TGGGCGACGC GGCCGGGGTG
CAGGCCGCGG GCGAACGCGC CCTGCGGCTG GCCACGCGCA ACGGCTGGGC CGACCAGCGC
GCCGTGCTCG ACATGATGGT GGGCGGTGCC TGGCTGCAGG CGCGCGACTT CGGCGCGTCA
ATCACGCGCT ACCGCCGGGC CCGCGATTCG GCGGCCGAGG CGGCGCAGGC CGGCAACCCC
ATGGGTGCAA CGCTGTTCAT GCAGGGCTGG ATGGCCGAAG GCGGGGCCTG GGCCGCGGCG
GGCGACATGA AGCAGGCCGC CTATGCATTC GAAGAGGCCG CCGAAGCGGC CCGCCGCGTG
CCCCACGCCA TGTTCGCCGT CGAAGGCCAT CGTGCCGCGG CCCAGGCCTG GCGCAGCGCC
GGCGAGCGCG ACCGGGCGTG GGCCTCGGCG CTGGCGGGCG TCCGCGAGGC GCGCACCATG
GCCGACGCCG ACCGCCCCCG GAGCACCGTG CCGCAGCTGC TGCACGACAT GCTCGTGATG
CAGGACCCCA GGCGCTGCGA GCGCATCGCG CACTGCGCCA CCCGCTACGA GCGCGACGCG
CGCGCGGCCC TGGCCGAAGC CGACCTGGCC GGCCATCGGC TGGGCGAGCG GCCGCCGCGG
CCCGCGATCG ACGCCATCGA GGCGCGGCTC GCGCAGCACT ACGAGCAGGC ATTCCAGACC
CTGCTGCGCG AGCGCGAGAA ATGGGTCCAA GGCAGCGAGG ACGTGTTCCG CACCGTCATC
GCGCTGGGCC GCCAATGGCT CGATCCGGCC TGGAGCGGGC TGCCGCATGT GAGCCATCCG
CTGGACCAGG GCGTCGACGA ATGGCGCGAG CCGCCGGCGT TCGCCCGCCT GCCCGATCCG
CAGCCCTTCG TCGAGGCAGC CTGA
|
|---|
| Protein sequence | MSTRNPVEKR MAQLHDLWWE RTDDPALRAI VLRAPPDSQR MLEAFFTLQM VDSEYSTPDL
FLRLDTAFET GFRYSRELRQ QLIDTYRHNR PQLVKQGVSA SWDEEGQPGW DSAAGFVQAG
CSLARHLRCQ RMSVVLQPAS VSDADCFERW FDAAMQTPMP PQEAGLLRLV LVDDSDSRAW
QPLVERHAGA MRVVDAPLDI LEAAREIAAQ SGGGSSGAAL FRQLYADMLS LLRLGDAAGV
QAAGERALRL ATRNGWADQR AVLDMMVGGA WLQARDFGAS ITRYRRARDS AAEAAQAGNP
MGATLFMQGW MAEGGAWAAA GDMKQAAYAF EEAAEAARRV PHAMFAVEGH RAAAQAWRSA
GERDRAWASA LAGVREARTM ADADRPRSTV PQLLHDMLVM QDPRRCERIA HCATRYERDA
RAALAEADLA GHRLGERPPR PAIDAIEARL AQHYEQAFQT LLREREKWVQ GSEDVFRTVI
ALGRQWLDPA WSGLPHVSHP LDQGVDEWRE PPAFARLPDP QPFVEAA
|
|---|
| |