| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0192 |
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| Symbol | |
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| ID | 7971401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 199429 |
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| End bp | 200520 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790795 |
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| Product | type VI secretion-associated protein, ImpA family |
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| Protein accession | YP_002942121 |
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| Protein GI | 239813211 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03363] type VI secretion-associated protein, ImpA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGTTGC CGCCGAGCGA GATCGAACTA CTGCAGTCGC CTGTTGAAGG CCCGCTTCCG
TGCGGTGAAG ACCTCGAATA CGACCCCGAT TTCATGGCGT TGCAGCAAGC GGCAACGGGA
AAGCGGGAGC AGCAGTTCGG CTCGACCATC ATTCCGGCCG AGCCGCCCGA CTGGGCCCGC
GTCGAGCGCA TTGCCAAGCA GCTGTGCCAG CGCACGCTCG ACGTGCGCGT GCTGGTTCTG
CTGACGCTGG CGTGGACCGA GAGCCGGGGA TTGCCGGGCT ACGTCGATGG CTTGCGCGTG
GTGGACGGCA TCCTGCAGAA GTTCTGGAAC GACGTGCATC CGCGCGTTGT CGATGGCGAT
TTCGAAGACC CGCTGCCGCG CATGAATGCG CTGGCTGCAT TGGCCGAAGC CGAGGGGCTC
GGGCGCAGCG TGCGCGATGC GCGCCTGCTC GAGGATGCCG GCGCGTCGAT GAGCCTGCGG
CAGGTCGAGG CCCTGCTCGA CTCGAGCAAG GCCGACCAGA TCGATTACCC GGGCGGCATC
GGCCGGCTGC GGGAAGTGGC GCGCCGCGCG CAGGAGAAGG CGGCGCCCGC GGTGGTGGCA
TTGCATGCGG CGCTGGAGCT GCTGCGGCGC ATCCGGGAGA CCTCGGAGCG GGCCCTGGGA
CAGAGCTGGG CCCCCGATTT CTCCCGGCTC GAACGCTCGC TTCGCACCGT GGTCCAGCTG
CTGCCCGAGC AGGCCCAGCC GGAGCCGGCC GAAGCATCGC AGGCGGCAGC GCAAGGCCAT
GGGTCGGCGC CGGCCGCTCC TTCGGCGCAG GGCGCTGCGG CCTTGGGCCA TGGCGCCTCC
GGTGCGCGTG CGGCAAGCAT TAAAGATATT GAAATATCGA CTCGTGATGA TGTGCAGGTC
TTGTTGGAAA AGGCGTGCCA GTACATGGAA CGCACCGAGC CCAGCCACCC GGCCCCCATG
CTCATCCGCA GAGCGCAAAG GCTGCTGGAC CTCAACTTTT TCCAGATCAT CGAAGAACTC
GTTCCCGAGG GCCTGCAGAA GATCGAAAGC CTGGCCGGCC GCTCGCTGAG CGGCGGGTCG
GCAGCGGAGT GA
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| Protein sequence | MGLPPSEIEL LQSPVEGPLP CGEDLEYDPD FMALQQAATG KREQQFGSTI IPAEPPDWAR
VERIAKQLCQ RTLDVRVLVL LTLAWTESRG LPGYVDGLRV VDGILQKFWN DVHPRVVDGD
FEDPLPRMNA LAALAEAEGL GRSVRDARLL EDAGASMSLR QVEALLDSSK ADQIDYPGGI
GRLREVARRA QEKAAPAVVA LHAALELLRR IRETSERALG QSWAPDFSRL ERSLRTVVQL
LPEQAQPEPA EASQAAAQGH GSAPAAPSAQ GAAALGHGAS GARAASIKDI EISTRDDVQV
LLEKACQYME RTEPSHPAPM LIRRAQRLLD LNFFQIIEEL VPEGLQKIES LAGRSLSGGS
AAE
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