| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0182 |
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| Symbol | |
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| ID | 7971391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 186193 |
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| End bp | 187398 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644790785 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942111 |
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| Protein GI | 239813201 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.955323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCAT TGCGTCACGT CTTCAGCGCC GCGGCCGTTG CCACGCTGGC CACCGCCCTC
GTTCCTGCCC ATGCCCAGGG CGTGATCAAG ATCGGCGAGG TCAACAGCTA CAAGGCGCAG
CCCGCCTTCC TCGAGCCCTA CAAGAAGGGC ATGGAGCTGG CCGTGGAAGA GATCAACGCC
AAGGGCGGCG TCAACGGCCG CAAGGTGGAG CTCATCACGC GTGACGACAA CGCCAACCCC
GGCGACGCCG TGCGCGTGGC CGAGGAACTG GTGGCGCGCG AGAAGATCGA CGTGCTCACC
GGCACCTTCC TCTCGAACAC CGGCCTGGCC GTGGCCGACT TCGCCAAGCA GAAAAAAATC
TTCTTCCTGG CCGGCGAGCC GCTGACCGAC AAGATGACCT GGCAGGGCGG CAACGAATAC
ACCTTCCGCC TGCGCCCCGG CACCTACATG CAGGCCGCGA TGCTGGTGCC CGAGGCGGCC
AAGCTCAAGA AGAAGCGCTG GGCCGTCGTC TACCCCAACT ACGAATATGG CCAGTCGGCC
GTGGCCGCGT TCAAGACGCT CCTGAAGGCC GCGCAGCCGG ATGTCGAGTT CGTCGCCGAG
CAGGCGCCGC CGCTCGGCAA GGTCGATGCG GGTGCCGTGG TGCAGGCGCT GGCCGATGCC
AAGCCCGATG CGGTCTTCAA CGTGCTGTTC GGCGCCGACC TTTCCAAGTT CGTGCGCGAA
GGCAACACCC GCGGCCTGTT CAAGGACCGC ACGGTGGTGA GCGTGCTGAC CGGCGAGCCC
GAGTACCTCG ACCCGCTCAA GGACGAAACG CCCAACGGCT GGATCGTGAC CGGCTACCCC
TGGTACGGCA TCCAGACGCC CGAGCACAAG GCCTTCTTTC TCGCCTACCA CGCCAAGTAC
AAGGACTACC CGCGCCTGGG TTCGGTGGTG GGCTACAGCA TGATCAAGTC GGTGGCGGCC
GGCATCGACA AGGCCAAGAG CACCGAGACG CCGAAGCTCG TTGCCGCCTT CAAGGGCCTG
CAGGTCGATA CCCCGTTCGG CAAGATCAGC TACCGCGCCG AAGACCATCA ATCCACGATG
GGCGCCTTCG TCGGCAAGAC GAAGAACGAG AACGGCAAGG GCGTGATGGT CGACTACACG
TATTTCGACG GCGCCAAGTT CCAGCCGAGC GCCGCCGACG TCAAGAAGTC CCGCGCGGCC
GACTGA
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| Protein sequence | MNPLRHVFSA AAVATLATAL VPAHAQGVIK IGEVNSYKAQ PAFLEPYKKG MELAVEEINA
KGGVNGRKVE LITRDDNANP GDAVRVAEEL VAREKIDVLT GTFLSNTGLA VADFAKQKKI
FFLAGEPLTD KMTWQGGNEY TFRLRPGTYM QAAMLVPEAA KLKKKRWAVV YPNYEYGQSA
VAAFKTLLKA AQPDVEFVAE QAPPLGKVDA GAVVQALADA KPDAVFNVLF GADLSKFVRE
GNTRGLFKDR TVVSVLTGEP EYLDPLKDET PNGWIVTGYP WYGIQTPEHK AFFLAYHAKY
KDYPRLGSVV GYSMIKSVAA GIDKAKSTET PKLVAAFKGL QVDTPFGKIS YRAEDHQSTM
GAFVGKTKNE NGKGVMVDYT YFDGAKFQPS AADVKKSRAA D
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