Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0083 |
Symbol | |
ID | 7971617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 81372 |
End bp | 82073 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644790685 |
Product | ABC transporter related |
Protein accession | YP_002942012 |
Protein GI | 239813102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGTCG TCCGCGATCT CAACACCTAC TACGGCAACA GCCACATCCT GCGCGGCGTG CATGCCGGCA TTCCGGCCGC CACCTCGGTC GGCCTGCTCG GGCGCAACGG CATGGGCAAG ACCACGCTGA TCCGCACGGT CATGGGCTAT GTGCGACCCG CTTCGGGCGA GGTGCAGGTC GATGGCCGCA CCGTCACCGG CTGGCCGCCC GAGAAGATGG CGCGCCTGGG CATCGGCTAC GTGCCCGAAG GCCGCGGCAT CTTTCCGAAT CTCTCGGTGC GCGAGAACCT CGTGATGAGC GAGCGCGCGG GCATCGACGG CCGGCGCGCC TGGACCTTCG ACCGCGTGAT GGCCACCTTT CCGCGGCTGG CCGAGCGGCT CTCGCACGGC GGCCAGCAGC TCTCGGGCGG CGAGCAGCAG ATGCTCTCGA TCGGCCGCGC GCTCATGACC AACCCGCGCC TGCTGATCCT CGACGAGGCC ACCGAGGGCC TCGCGCCGCT GATCGTGGCC GAGATCTGGC GCGTGATCAG CGAGATCCGC GCGACCGGCA TCGCCACGCT GATCGTGGAC CGCGACTACC GCAAGGTGCT TGCGCACACC GATCTGGCGG TGGTGATGGA AAAGGGCCAG ATCGTGCGGC ATGGCGCGTC GGCCGACCTG CTGTCCGAGC CGAAGGCGCT CGAAGACTTG CTGGGCGTGT AG
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Protein sequence | MLVVRDLNTY YGNSHILRGV HAGIPAATSV GLLGRNGMGK TTLIRTVMGY VRPASGEVQV DGRTVTGWPP EKMARLGIGY VPEGRGIFPN LSVRENLVMS ERAGIDGRRA WTFDRVMATF PRLAERLSHG GQQLSGGEQQ MLSIGRALMT NPRLLILDEA TEGLAPLIVA EIWRVISEIR ATGIATLIVD RDYRKVLAHT DLAVVMEKGQ IVRHGASADL LSEPKALEDL LGV
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