| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0082 |
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| Symbol | |
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| ID | 7974040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 80466 |
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| End bp | 81344 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790684 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002942011 |
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| Protein GI | 239813101 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.628575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGCG AGATCAGCCT CCTCGATCTT TCGGGCAAGC CCGTGCGGTT CGACGGCAGG
ATGCTAATGA ACGCGGCCGC CACGCCATGG CAGGGCTTTG CGCTGGAAGT GCGCGCGATG
CACGGCGACG GCGAAAACCC GGCCTGCTAC AACCCCCATC CGCTGCTCGC CTTTTGCATG
CGCGGCCATG TGAAGTCCGC AATGACCACG GGGCGCCGCA CCAGCCACGT CGAGAGCCGG
CCCGGCAGCG TGTGTATCTT CGACCAGGGC TACGAGGTCG ACCGCGTGAC GTGGTCCGGC
CAGTGCGACG AAGTGATTGC ACTGGAGATC CGCCCCGAAA CCCTGCGCAG CCTGATGCCC
GAGAGCGATG GCGAGCTGCA CCTGCAGACG CATCTCTCGA CCACCGACGC CACGCTGACC
TCGCTCGCCA TTGCCATGCG CGACGAGGTC GAGCGCGGCT GCACGTCGGG CCGCATGCAT
GCGCAGGGCC TGTCCATGGC ATTGGTGAGC TATCTGCAAA GCCGCTACGG CGGCGCGCGC
AACGCGAAGC GCGCGCCGGG GCGGCTCTCG CAGGCGGACC TGCGCAGGGT GTACGACTGG
GTGATGCAGC ACCTGGGCGA AGACTTCGGC ATCGACGAAC TCGCGGCCGA GCTGAACATG
AGCGCGGTGC ACTTCACGCG CCTCTTCAGG GCCAGCACCG GCTCAACGCC ATACCGCTAT
GTGATGGAGC AGCGCGTGCG CCACGCGCTC ACGCTGCTGG AGGGCCGGTT GTCGCTGGCC
GAGATCGCGC ACACGGTCGG CTTTTCGAGC CAGGCGCACT TCACGCAGGT GTTCAAGCAA
CTGGTGGGCA CCACGCCCGC GCGCGCACGG CTCGGGTAA
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| Protein sequence | MAREISLLDL SGKPVRFDGR MLMNAAATPW QGFALEVRAM HGDGENPACY NPHPLLAFCM
RGHVKSAMTT GRRTSHVESR PGSVCIFDQG YEVDRVTWSG QCDEVIALEI RPETLRSLMP
ESDGELHLQT HLSTTDATLT SLAIAMRDEV ERGCTSGRMH AQGLSMALVS YLQSRYGGAR
NAKRAPGRLS QADLRRVYDW VMQHLGEDFG IDELAAELNM SAVHFTRLFR ASTGSTPYRY
VMEQRVRHAL TLLEGRLSLA EIAHTVGFSS QAHFTQVFKQ LVGTTPARAR LG
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