| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0023 |
|---|
| Symbol | |
|---|
| ID | 7973981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 23591 |
|---|
| End bp | 25072 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644790625 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002941952 |
|---|
| Protein GI | 239813042 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4452] Inner membrane protein involved in colicin E2 resistance |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.885389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCAGT TGCTGAAGGC CCTGCAGGGT TCGATGCTGG TCAAGGTGGC CGGACTGCTG
ATGCTCACGC TCCTGCTGTG CATTCCGCTG GCCGAGATCA ATGCGATCAA CCGCGAGCGC
GGCAACAGCC AGCGCGAAGC GGCTGCGGAG CTCGCAGCCA CCTATGCGGG CCCGCAGACC
GTAGTGGGTC CGCTGCTGCT GGTGCCCTAT GTGGAGCGCT GGATGGAGCC GGTGCGCAAT
GCGCAGGGCC AGGTGATTGG CCAGGAGGCG CGCAGCAAGG AAATGACCCA TGTGGTGTTT
CCCGACAAGC TGCACATCGA AGGTTCGATG GCACCGCACG AGCGCTACCG GGGCATCTTC
AGGATTCCGT TCTATACGCT CAGCGCCACG CTGGGCGGCG GCTTTTCGGC CTTCGATCCC
AAGTCCGTGG CGCACAGCGA AACCGATTCG CGCATCGAGT TCAAGGCACC GTTCGCCGTC
TTCGGCGCGA GCGACCTGCG CGGGCTCGAC GGTTCGCCTT CGATCGCGAT GAACGGCGAG
GCCTTGCGTT TCAGGCAGCG GGTGCCCGGC CTGGCGGACG ACGCCCTGCT GGCCGACGGC
ATCCACGCAC CGCTCACCGG CGCCGCGCTC GCTGCATGGG AGGCGAAGGC ACCGTTGTCC
TTCGAGATGA AGCTCGGCCT CGTGGGGCAG GACACGCTCT CGATGGTGCC GATTGCCGAG
GAGACCACCG CCCATCTGAA GTCGCCCTGG GCGCATCCGA GTTTCGGCGG CCGTTTTCTC
GCCACCCAGC GCGAAGTGAC GCCGCAGGGC TTCGATGCGC ACTGGCGCGT GTCCTCGCTC
GTGACCTCGG CGCGCGAGCA GGTGCGCGCC GGGCTGCCGG GCCGCGGCGA TGCCGCCAGT
GCCGCGACGG CGGCGGCCGT GGCTGCAACC AGCCATGCGC AGCGCAACCT CGGCCCGCTG
CAGACCTTCG ACGTGTCGCT CGCGCAGCCG GTCAATGTGT ATTCGATGAG CACGCGCGCC
GGCAAGTACG GCGCGCTCTT CATCGGCCTG GTGATCATGG CGGCCTTCAT GTTCGAGCTG
TTCCGCAGGC AGCGCATGCA CCCGGTGCAG TACGGCCTGG TCGGCCTCTC GATCGCGCTG
TTCTTCCTGC TGCTGCTGGC CCTGTCCGAG AAGCTGGCCT TCTGGCTGGC CTATGCCAGC
GCGGCCGGCG CGAGCGTGCT GCTGCTGGGC ATCTATTTCA GCGCGGTCTT GCAAAGCTGG
ACACGCGGCG CGGGCTTCGG GGCCTATGTC GCGGTACTCT ATGGCGCGCT CTACGGCCTG
CTGGCATCGG AAAGCAATGC GCTGCTGCTC GGCGCCCTGC TGACATTCGG CATGCTGACG
GTGCTGATGC TCGCCACGCG CAAGGTCGAC TGGTATGCGC TGTCGGCCGG GAACCCCCGA
ATACCCGAGC CGGTCTTACC CGAGGCGGCC GCGTCCGTGT AA
|
|---|
| Protein sequence | MFQLLKALQG SMLVKVAGLL MLTLLLCIPL AEINAINRER GNSQREAAAE LAATYAGPQT
VVGPLLLVPY VERWMEPVRN AQGQVIGQEA RSKEMTHVVF PDKLHIEGSM APHERYRGIF
RIPFYTLSAT LGGGFSAFDP KSVAHSETDS RIEFKAPFAV FGASDLRGLD GSPSIAMNGE
ALRFRQRVPG LADDALLADG IHAPLTGAAL AAWEAKAPLS FEMKLGLVGQ DTLSMVPIAE
ETTAHLKSPW AHPSFGGRFL ATQREVTPQG FDAHWRVSSL VTSAREQVRA GLPGRGDAAS
AATAAAVAAT SHAQRNLGPL QTFDVSLAQP VNVYSMSTRA GKYGALFIGL VIMAAFMFEL
FRRQRMHPVQ YGLVGLSIAL FFLLLLALSE KLAFWLAYAS AAGASVLLLG IYFSAVLQSW
TRGAGFGAYV AVLYGALYGL LASESNALLL GALLTFGMLT VLMLATRKVD WYALSAGNPR
IPEPVLPEAA ASV
|
|---|
| |