Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_p840_20 |
Symbol | traD |
ID | 6961438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011311 |
Strand | + |
Start bp | 18326 |
End bp | 20404 |
Gene Length | 2079 bp |
Protein Length | 692 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | |
Product | conjugative transfer protein TraD |
Protein accession | YP_002261510 |
Protein GI | 215778370 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACAG ACAAACGCCC CAAACACAGC AATTACACCC GTGGCGGTCA AATTACCTTC CACAACTTGC GCATGTTTTT TCAAATAAAC ACCGCCCTGT TTAAGTGGAT AAGCGTCAGT GTGCTTGGCG CCACGGTGCT GCTCACTTAC GTTCGTGCGC CCGCCAATAC GTTCATGGCT GTCTGGTATT CAATCCGCAA TCACACGCTA CTCAAACTCA ATGCCCCATT AACTCGTGAA GTCACGACCT TATGGGAGGG TAAACGTTAC ACCAGCACAT TAGGCGCTCA ACTCAGTAAC AACACCTTAC TCGATTTAAA CGCTCAGTTT TGGTATCAAC TCCAAGTCAA TTTCTTGATA AGCACCTTAC TTGGACTCGG CCTTGTCTTT ATTGCCATGA CGTATTTTAA AAGTAAAGGG GACGAACAAA CCGACGATCA CTTTATCCGT GGGATAAAAA AGGCAACTCC TGCAGAGATA ACTAAAGAAG TTAAAGCCAA GAGCAAGCTA TCAAGTTTTG CCATCGATAA GCACCGTCTG TTTAAGCACA ATTTTGAAAT ACAGCACTTA ATGATTGACG GCACCACGGG CGCGGGAAAA TCCGTCGCAC TCAGAAAGTT GGTCCGTTGG ATACGTAAAC GTGGCGATAA GGCCATCATT TACGACAAAG GCTGCACCTT TGTCGGTAAG TTCTATAACC CTGAAACCGA CACCATTTTA AATCCCTTTG ATGAGCGCTG CGCCAACTGG GACATTTGGT GTGACGCCAA AGAAGCCCCT GACTTTGAAA ACATGGCCGC GGCCCTTATT CCTCAACATG GCGATGGCGA TCCATTTTGG GTTGATTCGG CGCGAACCAT CTTCTCAAGC ACCGCCTTTC AAATGATGAA AGACAATGAA CCGGTCAGCA CCGCTCGATT ACTGAGCCTG GTCTTAACCT CTGAGCTAGA AACATTAGGC TCTTTTTTAA AAGGCACGGA ATCGGCCACC CTCGTGTCTA ACAAGATTGA AAAAACCGCC ATTTCCATCA AATCCGTATT GGCCACGTAC ATTAAAGCCT TGCGATTCTT AGAAGGGTTG GATGAGAAAA ATGAACACAA CGCCTTAAAG CGCCCTAAAT TCTCCATCAC CGATTGGGTG CAAGACGATG AGCAAAAAGG CTTCTTGTTT CTCTCCAGTA ATGCACAACA ACACGCGTCA TTACGTCCCT TAATCTCAAT GTGGTTGGCC ATTGCCTCCA ACGCCATCTT AGGCATGGAA GAAGACGAAG ACCGCCGTAT CTGGGTGATA CTCGATGAGA TGCCAACCTT GCATAAATTG CCAGAGTTGG ACGCCATCAT CGCCGAAGTC AGAAAGTTTG GCGGCTGTTA TGTCATTGGC ATTCAGTCTT ACGCTCAATT GGTCAAAACC TACGGTAAAA CCACGGCTGA GGTCATTTTT GATTTACTCA ACACCCGTTT TTACTTTCGA GCCCCATCAG CCACGATGGC AAAAATATCG GCGCTAGATT TGGGCGAGCA AGAGATAGAC ATCTCCAAAG AAAACTACTC TTATGGCGCT CACGCCATGC GTGATGGCGT CTCTCTTGGC CACCAAACGG TGACAAGACC CGTGGTATCA ACCGCTGAAA TCCAAACTCT GGACGACTTA CAGTGTTGGG TTCGATTACT GGGGTGCAAC CTCATCACAC GATTAGATTT AGTGTTCGAT AAGATGCCAC AACTTTGTCA CCCCTTCATC AAACGCAACC ACAGCATGTC ACCTGAGATG ACCGCTATTT ATGAACAACT GACCTTTCTT GAGCTCATGG CACCGCAAGC GTTAGATAAA GAAAACCGTG ATGCATTACG AAGTGGCCAA GCGAAAAACT TTGAAGACGA AACACAAATG AACGCGGAAT GGGCAGATCA AAAACAGGCC ATCCGAGCCA ATAAAGCCAA AGAGTTAATT CAAAAAGAAA AAGGATCGAT GCTAACTCCA GAGAAAAAAG AGCAAGAAAG AAGAGACATT GAGCAAGAGC AAGAGGCTGA GCGCATGATA AATGAAGCCT CCATTGCCGA TATAGAGCTC GGAGATTAA
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Protein sequence | MDTDKRPKHS NYTRGGQITF HNLRMFFQIN TALFKWISVS VLGATVLLTY VRAPANTFMA VWYSIRNHTL LKLNAPLTRE VTTLWEGKRY TSTLGAQLSN NTLLDLNAQF WYQLQVNFLI STLLGLGLVF IAMTYFKSKG DEQTDDHFIR GIKKATPAEI TKEVKAKSKL SSFAIDKHRL FKHNFEIQHL MIDGTTGAGK SVALRKLVRW IRKRGDKAII YDKGCTFVGK FYNPETDTIL NPFDERCANW DIWCDAKEAP DFENMAAALI PQHGDGDPFW VDSARTIFSS TAFQMMKDNE PVSTARLLSL VLTSELETLG SFLKGTESAT LVSNKIEKTA ISIKSVLATY IKALRFLEGL DEKNEHNALK RPKFSITDWV QDDEQKGFLF LSSNAQQHAS LRPLISMWLA IASNAILGME EDEDRRIWVI LDEMPTLHKL PELDAIIAEV RKFGGCYVIG IQSYAQLVKT YGKTTAEVIF DLLNTRFYFR APSATMAKIS ALDLGEQEID ISKENYSYGA HAMRDGVSLG HQTVTRPVVS TAEIQTLDDL QCWVRLLGCN LITRLDLVFD KMPQLCHPFI KRNHSMSPEM TAIYEQLTFL ELMAPQALDK ENRDALRSGQ AKNFEDETQM NAEWADQKQA IRANKAKELI QKEKGSMLTP EKKEQERRDI EQEQEAERMI NEASIADIEL GD
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