| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_p840_18 |
|---|
| Symbol | traG |
|---|
| ID | 6961496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011311 |
|---|
| Strand | + |
|---|
| Start bp | 14923 |
|---|
| End bp | 17718 |
|---|
| Gene Length | 2796 bp |
|---|
| Protein Length | 931 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | conjugative transfer protein TraG |
|---|
| Protein accession | YP_002261508 |
|---|
| Protein GI | 215778368 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCG AATACTACGT CTACAGCAAC GGCGGCACCG CCCGTGACGT CCTGAATGCC
ATCGCCACCT TTTTTGCAAC GCCCACCTTT GGCAGTTTGG TGTCCATCAG CCTTATGTTT
TCTGTGGTTG CGACCTTAAT GACCTTCTTC ATCAGCCGAA ACCCCGCCAG CATCTACAAG
TGGGCGGCGG TGTATTTCAT CGTGCCCATG TTTCTCATCA ACATGAAAAC CGACATGCAG
GTGATTGATT TGACCGAGCC AAACGCGGTC AGAAGCGTCT CAAACGTGCC TTACATCACC
GCGATACCGA CGTGGTTTGC CAGCTCGCTC ATGCACGGCA TGACCGAGAC CATCGAAGCG
GTACTCTCAC AACCTGGGGA TGAACGCTAC GGAAAAACCG GCATGATGTT TGGCTCAAGG
CTGTATCAGC TCTCTCGTCA AAGCAACATC AGAGAGGTTG AACTCAAAGG CTACTGGAGT
GATTACTTCC ACAACTGCCT TGTTGGGGAC ATTCTCATCA ACAAAAAATA CACGTGGGAT
GAACTGTATG CGGCCAATGA CATTTGGGAC TTTTTGGACA CAAAAAGTAT GTCACCGCTT
CGCGGCGTCT TCTTTGGCCG TGGAAATTAT TACACCTGTA AAGACGCGTA CCCGCTCATC
AAAGCCAAAA TGAACCAAGC GGCCAACAAA GACATCACCT ACCTTGGCAG CTATCTGTAT
GGCAAACGCG CCAGCGCGAA CGCCAGTTTT TTAAACACCA GCCTGTCGAG CAGCTATCAG
CGCTACAACA ACATCAGCAC CAACGCGTCA AAAATCATGC GCCAAAACAT GACCATGAAC
GCCATTAGAA ACGGCACCCT AGAGATGAAC GCCACCGCCT CGGCGCTCAA TTACGCCTAC
ACCCAAAACA AAATGCAAAC CACCTCCATG TGGGCAGGGA TAGCCCTTCA AGCCAAGGAA
TACATGCCGT TGCTGCACAC AACCTTATTT ATTTTGTTTA GTTGTGTCAG TCTGTTTGTG
GCCGTGGCCG CCCTCATTCC AAGCTTAACC GTCATGGTGC TCACCAACTA CGTAAAAACC
TTTATTGTGC TCGGCATTTG GCCCGCCTTA TTCGCGATTT TAAATTACAT CATGATATCG
GCACTCTCTT ACACCACCGA AGGCATTACC GACAGCTTTA ATGGCATTAC CCTAAGCAAT
GAAAGCGCCC TGGATGAAAT GCACACCCGC TTTGCGTTGC TCTCTGGCTA CTTAATGATG
TCCGTTCCTT TGATTGCAGG CGCCATCTTA AAAGGCGGCT CGGCGGTCAT GTCGAGCCTC
AACTACCAAA TGGCGGGCAT GATAAACAGC ACTAACTCAA GAACCTCAGC GGCCGCCGCC
AGTGGGGACG TCAACCTTGG CAACATGCAG GTAGACAACC GCTCATGGGC CAATCAGAGT
GCCAACAAAC ACGACACCAA CTTGCTTGAG CGCATGGCGG GGCAACAAAG TACCCAACAA
GCGGACGGCT CCACCTACAC TCAACTGGCG TCCGGCCAAT CGGTCTACAA CACGGGCGAA
GCCGTGTCGA ACTTGCACTG GAATGTGGGC TCAAATCAAG ACGTGCAACA GTCGTTGAAT
GACAACTACC AAACCGCGGT GAACAACACC CAAAGCTACA GCAGTCAACT CAATGAAAAC
ATTCAGAGCG GCATGGCACT GCAAAGTCAT TGGTCAAACA ACATGAGTGA GCAAAAAAGT
TACGGCGAAG GCTACAACAC CGGCGCCGCC ACACAGATAA GCCAAGGCAC TCAACGCATG
GATTCCGCCA GTGACACCCT CAGCAATGAA ATGGGTTGGA GCAAAGACAA ATCCAATGCG
TTCTTGCAAA GCACCAGTGG CAGCATTTAC GCCAGAGGCG AAGGCAGTCT AAGTACCCCA
GCCGCCCTCA AAGCACTAAC TGGCGCGAGC GGCAGCCTCA CCGCAGGACT GGAAGGCAGT
TACCGCATCA CCGACGAAGA CCGTGAAACC TTCTCCAACA TGAGCAGTGA GCGCATTGGT
CAAGTGCAAA GTGCCATGAG CCAATACAGC GAAGGGGCGA ACGACATCCT CTCGGCCTCT
TCTCAAATTG ACAACAAAGC CGTCAATTCA GAGCTAGACC AATACGTACA AAGCTTCACA
AGCAACTGGA ATCAATCCGA AGGACTCGTC AACAACGTGT CTCAAAGTCA AGCCGAAAGC
CAAAACCTGT CCACGGCCAT GTCGAACATA GAGCAAAGCG GGATCAGCTT GAAAGAAAAC
TTAATGCCGA GTTTTCAAAA ATTTGTTGAA AAAGAAGACA GTCGAAATGC TCCATCTATC
CTCACGAGCA CGAGTGAAGG CGCCATCGCC GCCCGTCAAG AAATGTGGAA TAAATACCAA
GAAAGTGACG ACTTTAAAAA CGACGTGTTC GCACTGGCGG GCGTCAATCT GCCCACAACA
ATGAACAACA CCAACGAGCC TTTGGCCTTC AACGCGCATC AAACCAACCG CCGAGATGCA
CACGAAATGA AAACCGTCAG CTACTTCACC CAAAACACCG ACCGAATGGC GTTTACCAAA
CAAAGTGACG ATCTATTTGA TAAGACGCGA TTTGATGACA TCAAAAACGA CACCCTCTCA
CAACAAGAGG ACACTCGTGC TCACATTAAT CCACTAGAAA AACGAGAGCC AAGCAGTCCA
GTACAACCTG AAACGCACAC CAATGAATCA CAAATAAAGC CCATAAACAC AGAGGATGGC
TACCATTATT ACTCCTCTTT TAATAAAGAA AAGTAA
|
|---|
| Protein sequence | MTLEYYVYSN GGTARDVLNA IATFFATPTF GSLVSISLMF SVVATLMTFF ISRNPASIYK
WAAVYFIVPM FLINMKTDMQ VIDLTEPNAV RSVSNVPYIT AIPTWFASSL MHGMTETIEA
VLSQPGDERY GKTGMMFGSR LYQLSRQSNI REVELKGYWS DYFHNCLVGD ILINKKYTWD
ELYAANDIWD FLDTKSMSPL RGVFFGRGNY YTCKDAYPLI KAKMNQAANK DITYLGSYLY
GKRASANASF LNTSLSSSYQ RYNNISTNAS KIMRQNMTMN AIRNGTLEMN ATASALNYAY
TQNKMQTTSM WAGIALQAKE YMPLLHTTLF ILFSCVSLFV AVAALIPSLT VMVLTNYVKT
FIVLGIWPAL FAILNYIMIS ALSYTTEGIT DSFNGITLSN ESALDEMHTR FALLSGYLMM
SVPLIAGAIL KGGSAVMSSL NYQMAGMINS TNSRTSAAAA SGDVNLGNMQ VDNRSWANQS
ANKHDTNLLE RMAGQQSTQQ ADGSTYTQLA SGQSVYNTGE AVSNLHWNVG SNQDVQQSLN
DNYQTAVNNT QSYSSQLNEN IQSGMALQSH WSNNMSEQKS YGEGYNTGAA TQISQGTQRM
DSASDTLSNE MGWSKDKSNA FLQSTSGSIY ARGEGSLSTP AALKALTGAS GSLTAGLEGS
YRITDEDRET FSNMSSERIG QVQSAMSQYS EGANDILSAS SQIDNKAVNS ELDQYVQSFT
SNWNQSEGLV NNVSQSQAES QNLSTAMSNI EQSGISLKEN LMPSFQKFVE KEDSRNAPSI
LTSTSEGAIA ARQEMWNKYQ ESDDFKNDVF ALAGVNLPTT MNNTNEPLAF NAHQTNRRDA
HEMKTVSYFT QNTDRMAFTK QSDDLFDKTR FDDIKNDTLS QQEDTRAHIN PLEKREPSSP
VQPETHTNES QIKPINTEDG YHYYSSFNKE K
|
|---|
| |