Gene VSAL_II1099 details

Gene Information

• Locus tag: VSAL_II1099
• ID: 6962406
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 1197099
• End bp: 1199024
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 643382336
• Product: membrane signal transduction protein
• Protein accession: YP_002265365
• Protein GI: 209809826
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATTAT ATAAACAGCT CGTATCATGG ATGACAGCCG TCTTTTTATT GTTACTGATA 
TCTGTCTTTG CGATTGAATT TCGCACCACT CAAACCTTCT TAGAGAACCA ACAGCGCTCA 
GAAGTAAATA ACACGATCAA TTCGATGGGC CTCGCTCTTG CTCCTTATTT AGAAAATGAG 
GATAAAGTTG CAGCAGAATC TGTGATTAAT GCTTTATTTG ATGGCAGTTA TTATTCTGCT 
GTGAGATTAA CGTTATTAAG CACAAATGAA GAAATTGTTA GAGTCTATCC AATTAAAATC 
GAAAATGTTC CTAAATGGTT TACGGATTTA AATTTATTTA GAACGATTTC AGAGAATCGA 
GTTATTACGA GTGGCTGGAT TCAATTAGCT GAAGTTGAGA TCGTTACTCA TCCAGGGTAT 
GCCTATCAAC AGCTTTGGAA TTCTTTAACG CAATTGGGAA TGATCTTTTT CATCGTAATA 
GGCTTAGGGA TTGTTGTTAT TTCAATGGTT GTGAAAAGAG CCCTGTCTCC GCTGCAATCT 
ATTGTTATAA AAATGAAAGA AGTCTCAGAG AATAATTTTG ATACTAAATT AGCAAAACCA 
AAAACGAAAG ATTTAGAAGC AGTGATTTCT GGTATTAATT CAATGTCTTC GCAAATTTCA 
TTGAGTTTTA AAGCTCAAGT GCAAGAGGCT GAAAAACTAA GGGACCAAGT CTATCTTGAT 
CCAATTTCAG GATTGGGGAA CCGTTCATTT TTTATGGGCC AACTTAATAC GTGGTTATCT 
GAGTCTTCAA AAGGTGGTAT TGCAATATTA AAAGTTAACT TTATCAATAG GGTGTACGAG 
CAAGACGGTT ATGAAGCTGG AGACGATCTC GTTCATCAGT TGGCTAATTT ATTAAAAGCG 
ACACTCCCTA GTTCTAATGT CACATTAACT CGTTTAAATT CCTCTGAGTT TGGTTTCATT 
TTCCCTAACA TAGAAGAAGT TGAATTAAAG CTTGCAGCTG AAAATATTAT TGCTTATACG 
CAAGATATTA AGGGCGATCC GACGGCGACT GCGCCTGTTG ATGCTGAGCT TGGTGTTGTC 
TTTAATGAAA ATAGAAAAAC AACAACAGAG ATCCTTTCTT TAGTCGATAA CGCATTAACT 
CAAGCGCATG CTACCCCTGA ATTATTGTTT GGGTTTATTG CTGATGAAAG TCAACATCAG 
TTAATGGGTA AACAACAATG GAAGCAATTT GTTGATGAGG CGATTAGTGA GCAACTGTTT 
AATTTTACAC TTCAACTAGC AACCGCTCGT ATTGGTACTG TATTTCATCA AGAAGTGTTT 
TCAGCTATTG AGAAAGAGGG GCAACGTTAT TCTGCCAATC AATATTTGTT TGCTTTAGAG 
CAATTAAATG AAACAACCTC ATTTGATCAA TTTGTTATAA GCACAATGCT TGAGAGAATT 
AAAACCCAAG AGATAACACA ACCAGTGGCG ATCAATTTAG CGAATGGAAG TGTAGCAAAT 
CCAAGCTTTG TACGTTGGTT GACAGCTATT TTGAAAAAAA ATAAAGAAGC AATGCCTTTG 
TTGCACTTTG AGATCCAAGA AAGTGCTTTT ATTGAGAGTG AGGATCATAC GGCTTTATTA 
TGTAATGTTA TCCGAGAATC TGGTGCAGAG TTTGGTGTTG ATAACTATGG TCGTAATTTT 
GAATCTTTAG AATACATCAA AGTATTTAGA CCTAAGTACG TGAAATTAGA TTATTTATTT 
ACACACCAAT TGGATGACGA AAAGCAACGC TATATTTTAA CGTCAATATC AAGAACGGCA 
CAAAGTCTGG GTATTACAAC GATTGCCTCT CGTGTTGAAA ATAAAGAGCA ATTAGAGTTG 
TTATCTGAGC ATCATATTGA TGTTTTCCAA GGTTTTTTTG TTAATGAAAA AGTGAAGGAT 
GAGTAG 

 

Protein sequence

MTLYKQLVSW MTAVFLLLLI SVFAIEFRTT QTFLENQQRS EVNNTINSMG LALAPYLENE 
DKVAAESVIN ALFDGSYYSA VRLTLLSTNE EIVRVYPIKI ENVPKWFTDL NLFRTISENR 
VITSGWIQLA EVEIVTHPGY AYQQLWNSLT QLGMIFFIVI GLGIVVISMV VKRALSPLQS 
IVIKMKEVSE NNFDTKLAKP KTKDLEAVIS GINSMSSQIS LSFKAQVQEA EKLRDQVYLD 
PISGLGNRSF FMGQLNTWLS ESSKGGIAIL KVNFINRVYE QDGYEAGDDL VHQLANLLKA 
TLPSSNVTLT RLNSSEFGFI FPNIEEVELK LAAENIIAYT QDIKGDPTAT APVDAELGVV 
FNENRKTTTE ILSLVDNALT QAHATPELLF GFIADESQHQ LMGKQQWKQF VDEAISEQLF 
NFTLQLATAR IGTVFHQEVF SAIEKEGQRY SANQYLFALE QLNETTSFDQ FVISTMLERI 
KTQEITQPVA INLANGSVAN PSFVRWLTAI LKKNKEAMPL LHFEIQESAF IESEDHTALL 
CNVIRESGAE FGVDNYGRNF ESLEYIKVFR PKYVKLDYLF THQLDDEKQR YILTSISRTA 
QSLGITTIAS RVENKEQLEL LSEHHIDVFQ GFFVNEKVKD E