| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0534 |
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| Symbol | intIA |
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| ID | 6961940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 593499 |
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| End bp | 594482 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643381823 |
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| Product | site-specific recombinase IntIA |
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| Protein accession | YP_002264861 |
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| Protein GI | 209809323 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACATTC CATTAAACCT CAATCCCACC TCACAACGCT TTATTGATCA ACTTCGTATT
TTCATTCGCA CTCGTGGTTT AGCTTACAAT ACAGAAAAGC ACTATATTTA TTGGATAAGT
AGTTTTATTC GCTTTAAAAA CTACACCTCT AAAGAAGAAA TTGAAGCCTT TGACATCCCA
AGTTACCTTG AGCATCTCGT CATAAAACAA AACGTATCGC CTAATACACA GAAAACGGCC
CTTAATGCGC TTGTCTTTTT ATGTCGAGAA TTTTTACAAC AATCCGTTGA TAGTTTAGAT
TTTAAACGCT CAAAAAAGGC CACAAAACTG CCAACCGTAT TTACGCATAA AGAAGCCATG
GATGTTATTC ACAATCTAAA TCACCCAATT AAGCTCATTG CACAACTGAT GTATGGCAGT
GGATTGAGGA TCAATGAAGC GCTTCGACTT CGAGTTAATG ATATTGACCT AGATAAAAAG
ATAATCACGA TTAAAAGCGG CAAAGGGAAT AAAGATCGCA CCTCAATATT GCCTGAAAGT
GTTGTCGACG CGATAAAAAC ACAACTTGCG TTTGTTAAAC AACAGCATAA ACTCGATGCG
ATAAACGGTA ATGATGAAGT CTATATGTCC TACGCTTTGG CTGAAAAATA CCCAACGCAA
GCAAAAAGTT ATGGTTGGCA ATATGTCTTC CCATCCCCAC AAATCAGTAA AGACCCACGA
TCAGAGAAAC ATCGTAGACA TCATTTGTTG GATAGAACAA TTCAATCCGC AGTAAAAAAA
TCCATACTAA AAGTCGGCAT TGATAAAAAA GCAAGTTGTC ACACATTTAG ACACAGCTTT
GCAACGCGAG TATTAGAAAG AGGGGCAGAT TTAAGAACAA TACAAGAACT TCTAGGTCAT
TCTGATATTA AGACGACTCA GATCTACACA CATGTAATCG GTTTGCATTT TTCAGGAACT
AAGAGTCCGT TAGATTTTGA TTAA
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| Protein sequence | MDIPLNLNPT SQRFIDQLRI FIRTRGLAYN TEKHYIYWIS SFIRFKNYTS KEEIEAFDIP
SYLEHLVIKQ NVSPNTQKTA LNALVFLCRE FLQQSVDSLD FKRSKKATKL PTVFTHKEAM
DVIHNLNHPI KLIAQLMYGS GLRINEALRL RVNDIDLDKK IITIKSGKGN KDRTSILPES
VVDAIKTQLA FVKQQHKLDA INGNDEVYMS YALAEKYPTQ AKSYGWQYVF PSPQISKDPR
SEKHRRHHLL DRTIQSAVKK SILKVGIDKK ASCHTFRHSF ATRVLERGAD LRTIQELLGH
SDIKTTQIYT HVIGLHFSGT KSPLDFD
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