Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0156 |
Symbol | |
ID | 6961632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 182270 |
End bp | 183169 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643381476 |
Product | HTH-type transcriptional regulator, LysR family |
Protein accession | YP_002264518 |
Protein GI | 209808980 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATCTCA ACTCTTTGAA TATATTTGTA AATGTAGTTC AACACGGTTC TTTCTCTGCG GCTTCTAAAA TCATGAATAT TCCAGTAGCT ACAGTTAGTA GACGAGTCAG TGAATTAGAA AACCAGTTAG ATCAACAATT ACTGATACGA ACAACTCGAA AATTATCTGT TACCCACGTT GGCCAATTGC TTTATCAACG CGCCTCTTCA GGGCTAAATG AAATATTTGA TGCCGAACAA GCCATCAATG AAGAGCAAGA AGATCTAAAA GGTCAATTGC GTATCTCTAT CCCACCAGCT CTTTATGTTT TTGATGACAT GTTCCACCAA TTCAATAATA CCTACCCATT AATTCAATTG GATATTTTCA GTACGGTTCG TAAAACGGAT TTTATTGATG ATGACGTAGA TATTGTTATT CGCGTGGGAA AAGTGAATTA TCAATCGGCC ATTGCGAGGC ATTTAGGTAA GTACCGTCAC GTGATGGTTT GCTCACAAAA ATTCATCAAT AAATACGGTA TCCCAAAAGA TCCTACGGCA CTTGCTAACT TACCGATTGC CGCATGGCGA TTTGGACACG GTCCTATAAC TTGGCAGCTA GGTGAGCATT GCATTGAAAT TACCCCTAAA TTTTCATCCA GCGATTATGT ACATTCCCTC TCAGCTATTC GCACTGGTGA AATGCTAGGA GAATTACCCC CAATGCTTGC GAATCCACTG CTGAGATCTG GCGAATTTGT TGAAGTGCTT GCCGAATATC CTTTACCTGA AGTGGATTTA CACATCATCT ACCCTTCAAG GAAGCACTTA TCTCGCTTAA GTAAAGTGTT CATCGATGAC TTTATTCAGT TTTGTCGTAC CCATCAAAAA GGTGACTCTC TGTTTAATAT TTCACTGTAG
|
Protein sequence | MDLNSLNIFV NVVQHGSFSA ASKIMNIPVA TVSRRVSELE NQLDQQLLIR TTRKLSVTHV GQLLYQRASS GLNEIFDAEQ AINEEQEDLK GQLRISIPPA LYVFDDMFHQ FNNTYPLIQL DIFSTVRKTD FIDDDVDIVI RVGKVNYQSA IARHLGKYRH VMVCSQKFIN KYGIPKDPTA LANLPIAAWR FGHGPITWQL GEHCIEITPK FSSSDYVHSL SAIRTGEMLG ELPPMLANPL LRSGEFVEVL AEYPLPEVDL HIIYPSRKHL SRLSKVFIDD FIQFCRTHQK GDSLFNISL
|
| |