| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2153 |
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| Symbol | |
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| ID | 6988433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2310236 |
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| End bp | 2311708 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 643380439 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002263523 |
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| Protein GI | 209695594 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAAT CTAATTTAAA ACACATCTTT CTAATCCCAA CACTGTTCTT TGTGTTGATC
GTGGGGTTTG TTTTAAATAA TCACCTTGGT GCAGTCCAAC GACAAGTGAA TCGAGAATAT
GATCGTATTA TCGATTCACT TCAACGAACA ATAAAAGTCA TTATTTCTTT AGATTACAAC
CTCTCTCAAA TGTATAAACA AGAAACGGGT GAATTTTATA ATCATAATTT TGAGATGGAT
GAGAAGGCCG GACTTTGTGT TATTCGTCCC AGTAACGATC TTGATGCTGT CATGGTTAAC
CAAGGTATCT CGGTGCCTGA AAGTCGCTTA GATTATAGTA TTGCTGGCAG TGAAGATTTA
TGTGACGAGA ATTCAGAATT ATATAAAATA GCGTCTAAAA AAATCGCCTT GGCACCTGTA
ATTTCCTTCA TTCATGACTA CGAAAATTAT CTTCATGGCA TCTATTTTAT TTCAAAATAT
AATTACATCA TTTCAGCCCC TAAAGAAATA GCAGAAAATC TAACGAAACA AAGTTTAGAG
ACGATTTACA CTAGACCATA CTGGAAGAAC AGTATGAAAA ATGATAATGA AAGGCACATT
ACATTTACAC CTCCCTATAC TGATGCTTTT TTTGATGGGC TAGAGGTTCT TACTTTCTCA
ACGCCTATTT ATTATAAAGA TTTATTTAAA GGTGTTCTGG TTATTGATTT ATCGGTGGAT
AAACTATTAC GTTCTAGTAA TGACATATCT CAGCATATTC AATTGTTAGA TAGCGATGAA
TATGAACGCT TTGAACAATA CCGATTTATG CAGCCAGTTA TTCTCAATGA CACTAATTTT
ACGTATTTTC TGTATTATAA AAGCTCAATA AAAGAAGAGA TCAAAAGTTT CTTTGTTCAT
GATGCAAAAA GTCTCATTTT AATTTTTGTC ACTTATATCT TAGCGCTTCT ATCTATGTTT
TATTACCAAA CTCGATTGTC ACAGAATTAT TATCGTGATT TAGCAAAGCA AGATCCAATG
ACAGGGTTGT ATAACCGTCG AGGGTTTGAA ATGAGCTTAC AAGATCGTGT GGTTAAAAAG
TTTGTTGGTT TTGCTATTTA TGACATCGAT GACTTTAAGC AGATTAATGA TGTGTTTGGT
CATGATGTTG GAGATGAAGC GATTAAGTAT GTAGCAAGAA TGCTGACTAA GAGTGTGAGA
GACAGTGATA TAGTCTCTCG CTTTGGGGGT GAAGAGTTTG TTATCTGCAT TAATGCAGAT
TCAAGAGAAA CGCTTGAGAA TGTATGTGAA CGAGTGAGAA AATCAATTCA GGATTCATCA
GGTAAAATAG TGAGCGGTGG TTTTACTGTG TCTGGAGGGG TTTCGATTAT TGATTCTCAT
CAAGACTTTT CATTTGAACA CATTATTAAA AAAGCCGATG ATTTGTTGTA TAAAGCCAAA
GAAGATGGAA AGAATCGTGT TTACTTTGCA TAA
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| Protein sequence | MPKSNLKHIF LIPTLFFVLI VGFVLNNHLG AVQRQVNREY DRIIDSLQRT IKVIISLDYN
LSQMYKQETG EFYNHNFEMD EKAGLCVIRP SNDLDAVMVN QGISVPESRL DYSIAGSEDL
CDENSELYKI ASKKIALAPV ISFIHDYENY LHGIYFISKY NYIISAPKEI AENLTKQSLE
TIYTRPYWKN SMKNDNERHI TFTPPYTDAF FDGLEVLTFS TPIYYKDLFK GVLVIDLSVD
KLLRSSNDIS QHIQLLDSDE YERFEQYRFM QPVILNDTNF TYFLYYKSSI KEEIKSFFVH
DAKSLILIFV TYILALLSMF YYQTRLSQNY YRDLAKQDPM TGLYNRRGFE MSLQDRVVKK
FVGFAIYDID DFKQINDVFG HDVGDEAIKY VARMLTKSVR DSDIVSRFGG EEFVICINAD
SRETLENVCE RVRKSIQDSS GKIVSGGFTV SGGVSIIDSH QDFSFEHIIK KADDLLYKAK
EDGKNRVYFA
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