| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1074 |
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| Symbol | |
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| ID | 6988268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1166802 |
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| End bp | 1170623 |
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| Gene Length | 3822 bp |
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| Protein Length | 1273 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643379461 |
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| Product | hypothetical protein |
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| Protein accession | YP_002262561 |
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| Protein GI | 209694633 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGACG CATCTAAAAA ATTCTTTAAA ACGTTAACAC CTTTAGCGTT ATTCGTTGCA
TCTCAGTGTT CGGTTGCGAA TGCTGCAAGT ACAATTCAAA TTGTTGGCCC TGATGGGAAA
GATCAAACGA TCAGTTCGCA GGTGGTTGAT CCTACGTCAT CAATCAGAAC GTCGACAGTC
ACGACTTCTG CTTCTGTGGC TAAAGCACCG ACGGCAACTA AAATTTATGG TCCAACGGGT
GAAAATGAAA CCCTCTGGTC TATTGCAAGT CGTGTTAATC CATCAACGAC GACATCGGTA
CAGCAAACCT TACTTGCTAT TTATCGTCTA AACCCACAAG CCTTTGAAAA TAACAATATT
CATGGTTTAG AGCCCAAAAG CCGTTTACGT CTACCAACGC TAGAACAAGT TCGTCGTGAA
AATACGGATG ATGCGAAGCA ATTACTTGCC GCACATAAAA AGAAACAAAC GGCACAGAAA
AAAGCAGAAA CTCGATCGTC GGTCGCTCCT AAAGCATCCA CAGAACCTAA AGTAGATGTA
AAACCAAAAC TAGAGAAACC AACGTTTACT GAGAAAAAAA CCGCAGTAGA AAAAACAGTA
GCACCAATAA TGGCAGAAAA AACAGCTGGC CTTGGTGAGT TAAAAACAGA ACTTGCAACA
ACAGAGCAAG AGTTCTCAGC GTTACAAGAA AATAATCATC AATTACGTGT GCGATTAGCT
GAAGTTCAAA ATGAAGTGGA TAATTTAAAA AATGAGCTAG GCAATGAAGA TCGTATTCGT
AATGAAGTTG AGAAATTCAT TACTGAGCAA AAACAACTTG CCGTTTCTGA GAAAAAAGCA
GAACCAAGTT CAATGGATAA ATTGGCATCA AGCCCTGGTT TAATCGCATT ACTTGCGTTA
ATTCCTGGTG CGTTAATCGC AGGCCTTATT GCTTTCTTCT TATCACGTCG TAAGAAAGAA
GAGGAAGAAG AAGCAGAAGC AGAAGCAGAA GAGAATACGC AAACCGATCT ACCGTCAGCT
CTGATTATGC CTGATGACCA TTTTAATATG GATGATGATA TTCCAGAGAT CAGCTTAGAT
GATGACGATG ATATCTTAGG CGATCTAGAT AATGATGAGT TTTTATTCGG TGACGATACG
AACACGGATT CTAACGATGA TTTGTTCGCT GAGTTTGAAA ATGAAAACAC AGATTCTCTT
GATGACCCGT TTGCATCGTT AGACGATGAA GACGATTTAG ATTCATTATT ATCAAAAGGA
GATTCGGAGT TAAGTGATTT AGATGATCTT GATAGTTTAG ATGATTTGGA TGACGATCTT
GATATGTCAG GCAGCGCATT AACTGTTGAT GCAGAAGAAA AGGCGCTTGG CTTAGAAGAA
ATGGAAAAAG CCCTAAACGA CTTTGATAGT GACTTATTCT CTAAAAGTGA TCTAGAAGCG
GAGGATGATG ATTTTGACTT ATCATTAATT GATGATTCTG ATCTATCGGC TGTAGATAAA
AAATCACCAG AACTTGAAGG TAATGAAGAT CTTGACGGTG GCGAATTAGA CCAATCGATG
CTAGATGATC TTTTCTCATC AATGGATACT GAAGAAGATG AAGAATCTGT CTTAGAACAA
GGTTGGGATT TGGATGAAAA AGAAGAAACT AAAATTGTTT CTGAACCAGA AAAAAGCGGT
TTAGAAGAAG ACGTAGATTT CGAATCATTA TTAGGTGATA TGGCTGATAC TGAAGACAAC
AGTATTGATT TTAATCTTGA TGATGACACC GAAGTATTGA ATAACATACT TCCTGAACAA
AATGAAAAAG CGGATACAAG CCTAAATTTT GAAGATGACA GCACGGCATT GCTAGATGAA
ATGCTCGCTG AAGCAGATGA CGACGACATT AACTTAGACA TTGATGATGA TAACACGTCG
TTATTAGATG AAATGTTAGC TGAATCAAAT GATGACGATG ATTTAGAGCT TGATGATAAT
AGCACTGCAT TATTAGATGA ATTACTTGAA GAGTCAGATC ACGATAGTAC CGATCTTGAT
GATATTGAAA TAGATGAAGA CAGTACGGCG CTTTTAGATG AATTACTAGC TGGCGATGAT
AATGATGATT CTACGTTTGA ATTAGATGAA AACAGTACCG ATTTATTAGA TGAACTAATC
GGTGACGATT CTGATGAGGA AGAAGCTCTG GGAAAGAGTG GCGATGATGC TGAAGAAGGT
GTAACAGTAT CAGAGACGCT TTCTGAAGAA ACACCGAGAG ATGAAGATTG GTTAGTTGAA
AGCGATGATG AAGAGGATGA TATTTCTTTA TTTGAACCAG AAACCGCTGT TGAGACTGAA
GCGTTTGATA TCGATGAAGA AGAATTACCG CTAGAATCTG AAATTCCAAC AGATAATGTG
CTTGAAGATG ACGTTATTGA AACGTTGAAT ACAGATGCTG AAGAGCATGA TGACGTTGAA
CTTGCAGAAG AGGCAGAATC AGCTTCGCAA GAGAATGACG AACTTGACGC GTTTGATATT
GATGAAGAAG AGTTACCTCT AGAATCTGAA ATGCCAGCAG ATAATGTGCT TGAAGATGAC
GTTATTGAAA CGTTGAATAC AGATGCTGAA GAGCATGATG ACGTTGAACT TGCAGAAGAG
GCAGAATCAG ATTCGCAAGA GAATGACGAA CTTGACGCAT TTGATATTGA TGACGAAGAG
TTACTTCTAG AGTCAGAAAT GCCAACAGAT AGCGAAGACC TCAACGAAAG TGCTATTAGT
GATCTTCTTT CTGAACAAGA AGAACAAGAA TCATTATTTG ATGAGATTAA TGTTGATGAT
GAACTTCTTT TAGATAACGA AGAACGTCCA CAAGAGCAAG AGGTATCTTC TCAATTAGAA
GAAACAGAGA CGGCTACTGA AGAAGATGAG ACGTTATCGG AACTTGATGA TTTATTGGCT
GATTTTGATA CTGATGTAGA GATAAGTGAT GAGGAAGCTG GCATTGAAAC GCCAGAAATC
GAAGAGCTTG TTACTGATGA AGAATCAGAG ATGCCATTAT CTGACATGAT TTCTGAAGAT
GAGAACGAAG ACGAAAGTGA TTTTTCATTG GATGATTTTG TTGCATCAAA CGCAACTGAC
TTTACTGATG ATTCACGTGA GCATGATACT GAGCTATCTG AAACGAATAA TGAAGAAGAT
ATACTGCCTT TAGTTGATGA TATAGAGAAA GAAGACCATC AATTTGATGG TTTATCAATT
GAAGATGCTT TAGCTGCACT TGAAGAAGAA GATGATCTTC AAGTGACTCC TTTAACGGAT
GAGACGGCGG CACCTTTTAA TTTTTCATCG CAAGTATCTG ATGAAGAAAA AGAAGCATTA
ACGCATGTTG ATAGTGCCGG TTTAGATATT GATAGTATGT TAGAAGATGG AGGAAGCGAC
TGGAGTGGTT TCTCTCTTGA TGACACATCG AATGTTGACG ACGCATTAGA AGATGAAGAT
TGGTCAGAGC AACCAAATTT AGAAAATACG CCTAATAGGG CGGATCAATT CCTAAGCATT
GATGCTTTGA TCGCTGAAGC TGAAAGCGGT GAAAGAACGG ACATTGATGA TGAAGAGTTA
AACCTTGATG TTGGTTTGGA TGAATTCCCT GATGTTCTAG GAAATGTAGA AGCTCATGAT
GTCGATATAA ATAGTGATGC TCATAGTAAG CTAGACTTAG CGAAAGCTTA CATTGAAATG
TCCGATGATA AAGGCGCACT TGAATTATTA GAAGAGGTAT TACGTTGTGA TGATCCTCTG
CTTAAAGTGG AAGCTGAGAA GTTGATGAAG CAACTCGATT AA
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| Protein sequence | MSDASKKFFK TLTPLALFVA SQCSVANAAS TIQIVGPDGK DQTISSQVVD PTSSIRTSTV
TTSASVAKAP TATKIYGPTG ENETLWSIAS RVNPSTTTSV QQTLLAIYRL NPQAFENNNI
HGLEPKSRLR LPTLEQVRRE NTDDAKQLLA AHKKKQTAQK KAETRSSVAP KASTEPKVDV
KPKLEKPTFT EKKTAVEKTV APIMAEKTAG LGELKTELAT TEQEFSALQE NNHQLRVRLA
EVQNEVDNLK NELGNEDRIR NEVEKFITEQ KQLAVSEKKA EPSSMDKLAS SPGLIALLAL
IPGALIAGLI AFFLSRRKKE EEEEAEAEAE ENTQTDLPSA LIMPDDHFNM DDDIPEISLD
DDDDILGDLD NDEFLFGDDT NTDSNDDLFA EFENENTDSL DDPFASLDDE DDLDSLLSKG
DSELSDLDDL DSLDDLDDDL DMSGSALTVD AEEKALGLEE MEKALNDFDS DLFSKSDLEA
EDDDFDLSLI DDSDLSAVDK KSPELEGNED LDGGELDQSM LDDLFSSMDT EEDEESVLEQ
GWDLDEKEET KIVSEPEKSG LEEDVDFESL LGDMADTEDN SIDFNLDDDT EVLNNILPEQ
NEKADTSLNF EDDSTALLDE MLAEADDDDI NLDIDDDNTS LLDEMLAESN DDDDLELDDN
STALLDELLE ESDHDSTDLD DIEIDEDSTA LLDELLAGDD NDDSTFELDE NSTDLLDELI
GDDSDEEEAL GKSGDDAEEG VTVSETLSEE TPRDEDWLVE SDDEEDDISL FEPETAVETE
AFDIDEEELP LESEIPTDNV LEDDVIETLN TDAEEHDDVE LAEEAESASQ ENDELDAFDI
DEEELPLESE MPADNVLEDD VIETLNTDAE EHDDVELAEE AESDSQENDE LDAFDIDDEE
LLLESEMPTD SEDLNESAIS DLLSEQEEQE SLFDEINVDD ELLLDNEERP QEQEVSSQLE
ETETATEEDE TLSELDDLLA DFDTDVEISD EEAGIETPEI EELVTDEESE MPLSDMISED
ENEDESDFSL DDFVASNATD FTDDSREHDT ELSETNNEED ILPLVDDIEK EDHQFDGLSI
EDALAALEEE DDLQVTPLTD ETAAPFNFSS QVSDEEKEAL THVDSAGLDI DSMLEDGGSD
WSGFSLDDTS NVDDALEDED WSEQPNLENT PNRADQFLSI DALIAEAESG ERTDIDDEEL
NLDVGLDEFP DVLGNVEAHD VDINSDAHSK LDLAKAYIEM SDDKGALELL EEVLRCDDPL
LKVEAEKLMK QLD
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