Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1003 |
Symbol | |
ID | 6986774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1107542 |
End bp | 1108141 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643379389 |
Product | putative HTH-type transcriptional regulator |
Protein accession | YP_002262492 |
Protein GI | 209694564 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCGCA GAAATGACCA TTCTCATCAA GAAATACGTG AAATGGCATT AAATAATGTG AAGTTGTATC TTGAAGAACA CTCACATCAT GAACTCAGTT TAAGAAAATT AGCCAAAAGC ATTGGTTATG TCCCTAGCAC GCTCGTCAAT ATTTTTGGTA GCTACAATTT ATTACTGCTT CGCTCCATTG CCCAAACGCT TGATGAACTG ATGCAACGAA TCGCATTAGG TATAGAAAAT AGCACAACAT CAGAAGAAGC ATTAAAAGCC ATTGCTTACT GCTATTACGA CTTTGCAAAA CAACACCCTA ATCGCTGGCA GCTAATCTTT GAGCATAATA TGAATGGTGA ATTATTACCG GAATGGCAAG AAGACCGCAT CAATCAAATC ATGACAATGC TAGAAAGTAT TATTCGAACC ATTAACCCCT CAAAGAGTGA TGGTGATATA GTCGTAACCA GTCGTGTTAT TTGGGCAAGC GTTCACGGAA TTACACAATT AAGTGTTGAT GATTTATTTT TCTCTGGCTT ACCATTTGAT GGGCACCAAT TAATCGATAA CTTATTTGAT AATTACATTA ATCAGTGGAA GATCAGCTAG
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Protein sequence | MARRNDHSHQ EIREMALNNV KLYLEEHSHH ELSLRKLAKS IGYVPSTLVN IFGSYNLLLL RSIAQTLDEL MQRIALGIEN STTSEEALKA IAYCYYDFAK QHPNRWQLIF EHNMNGELLP EWQEDRINQI MTMLESIIRT INPSKSDGDI VVTSRVIWAS VHGITQLSVD DLFFSGLPFD GHQLIDNLFD NYINQWKIS
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