Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0488 |
Symbol | |
ID | 6988298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 545504 |
End bp | 549367 |
Gene Length | 3864 bp |
Protein Length | 1287 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643378868 |
Product | hypothetical protein |
Protein accession | YP_002262011 |
Protein GI | 209694083 |
COG category | [S] Function unknown |
COG ID | [COG3164] Predicted membrane protein |
TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.135683 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCACTA AGTTAATTCG TACTGAACGT TGCTTGATGG GATTATTGCT GCTGGTATTT TTACTGGCAG CATTAGTCAT AACAAGCCTA CGCCTTTTAT TACCTACCTT AAATAAATAC CAACCAGAAA TTGAACAGTT ACTTTCTCAA TCTACTGGTT TCTCAATCTC AATTGGTGAA GTAAAAGGGC GCTGGCGAAA TACCAATCCA TCCTTGAATC TGACTAAACT AACAGCAACC GATCCAAATA CTGGGGATGA AATCATCTCT GTTGGTTCTG TTGAAATTCA ACTGAATATT CTTTCCTCTC TTTGGGCCCA ACAGCCTCAA TTTGCTGATC TTCGAATCGA TAAATTAACC GCAGATTTGA CCTCATTAGG TAACGATAAA TCAGAAGAAA ATAAATTAGA AGTTGACGAT AAAAATACAG AAGACTCACT TTCTAAACGT TTAGAAGATC TCTTTTTAGT CCGATTGAAC CATTTCTCGA TAAAAAATTC TCACGTTACG TTCACTGCAT TAAATGGCAA TGAAAAAACG ATCTTAATTG ATTCGTTACA ATGGCGAAAT GAAAGCAGAA AACACCTTGC TGAAGGGGTT GTGAGTGTTT TAGGCAGCGA AATTAACCAA CTGAAAGTGA TCGCAAACTT TAAAGAGAAA GGGACTTTCA AAAGTTTAGA TGGTGATTTT TATGTTGAAG CCCAAAATAT CCAAATTACG CCATGGATAA AAGACAATAT TCAGCAAGAA TATGGGGTTA CTGAAGGTGA GGTATCCGTT AATGCTTGGC TATCGTTTAA AAATGGACAA CCCATTGATG CGTTAGTTGA AGCGGCTCCT TCTTATATTA ACTGGGAAGA AGATAAAACG ATCCATAAAT TGAGTATCGA AAGTGGAGTG TTTGAGCTTC AACCAGAAAA AGAAGGTTGG AAAGTCATTT CATCAGGCAT TCAAATTAAA CATGAAGACG ATGAATGGCC AGAGCTTGCT GGGAATTTTG TTTGGCAACC GTCTAAATGG ATACTTAATT TAGGTCATAT TGATCTTGAA AATGCGCTTG GACTCAAAAC ATTATTACCA GCATCTCAAG ATGAAATCAC GAATTTACTT GGTACTCTTA ACCCTAAAGG GGATATCGAT GATATTCGAG TTGAGTACGA TGCGACAACG GGACTAAATT ATTCGGCATC CATACATGCT GCCGGAATGA ACCAGTGGGA ATTACTGCCT GGTTTTCATA AATTAGATAT TCTTGTTGCG GGCGATGAAA CAAAAGGCAA AGCCGAGCTT TCTTTGGTTG ATGATACGTT GCCTTATGGT GATGTATTTC AAGCACCTTT GAATATTGAA AATGCAAAGG TAACCGCTTA TTGGAAGGTT AATGATGAAG GCTGGCGTTT ATGGTCTGAT TATATTGATG TATCAACTCC TGACCTTCAA GCCAAAGGTG AGTTCCGATT AGACTTCCCT AAAGATAAGC CTTCAGTGTT GTCTTTTTAT GCAGAAGCTG ATGCGTTTAA TGCAGATCAA ACTTGGCGTT ATCTACCAAC ACTCGCATTA GGTCAAGACC TTACCGATTA CCTTTCCTCT GCTGTTCAAG GAGGAAGTGC TAAGACGGTA CAATTACTAT GGTATGGCGA GTTAAGTGAT TTTCCATATA CAAAATATGA CGGTATTTTT CAAATTAAAG TAGGCCTTAA AGACGCTAAG TTTTCGTTTG ATACTGCTTG GCCTCCATTA ACTAATTTGC AATTGGATTT GATGTTCCAA AATGCATCGA TGTTCTTAAG TTCACATTCT GCAGACCTAA TGGGCGTGCA TGCAACCCGA GTAACTGGAC AGATTGCTAA CTTAGCAGAG GACGGTAAGT TAACGATTAG AGCAAGAGCG AATGGATCTG GTAAAGCGGT TCGTGAATAC ATGACTGCAA CGCCACTGGT TGATTCTGTG GGGGCGGCAC TTAATAGCAT TCAAATTGAT AATAGAGTGG ATGCATTATT ACGGTTAGAT ATCCCATTTA ATAGTGAAGA TGTTAGAGCA TGGGGCTATG CCGATTTAGC GAATAATCAT ATTGAATTGC AATCGCCTAA TATCGAACTT ACGAATGCAA AAGGTCGTAT TGAATTTGAT AATGATGTAG TGAAAGCAAA GGGGATCAAA GCCTCTTTAC TAGGACAACC GATCTCATTG TCATTTAATG GTGAAACTCA ATCCGATTTT TATGGGGTGA ACATTGATGT TAAAGGTAAA TGGAATATTG ATCCTTTAAG GGAATACATT GATTCGCCGT TAATCGATAA AGTTAAAGGT ACATCAATCT GGGATACCTC GATCAATTTA CAGATGGCGG ATGTTGGGTT TACTTATCAA ATCGGGATGG ATGCGGCTCT TAACGATATT CAATCAACGC TTCCATACCC TCTTGCATTA GAGAAAGGGT CAACGGATAA AGCGGTATTA CAGGTCTCGG GTAATGCTGA ACGGTTATCT GGACGCTTAA TTTTTCCTGA TGCAAAGTAC CAAGCTGAGA TTAGCATTGA TAAAGAAACG CCAGTGATTG ATGCAAGTTA TCTTATTGTT GGGCGTGGAA ACTTTAAAGT CAGTCCAATT GTCGGTCACT CTGCGTCATT AAATACGAAG AACTTAGATG CGGATGCTTG GATTGAAGAG CCTATTCAAA GTAAAGAAAA ACCAAGCTCT GGTTCAAAAA GTAAAGCGAG TAGTTTTCCG GTTATTCCAA TGCCAACACG GATTGATACC GATATTAAAT CGTTGCGTTT GGCGAGTATA GATTGGAATG ATGTAAATGC TGATATTCGT AAAAAATCAC AAGGTTGGTA TTTTCAGGTT CAAAGCCAAG AAGTTGATGG TAAAGCAACA TGGAAGAATA ACGAAGCACT GGCGGTGCAA CTCGATAATC TACATATTTT CATTCCCAGC TTAGATAATG TTGATAGCGA AGGAGGGCTT AATTACGCAA AAGCAAAAGA TCCATTGATC TCTTCTTTTG ATCGTGAATT CTTTAAATTA ATGCCCAACT TAGAGTTAAC AATTAAAGAT ACTTGGGTTC AAGGGTATAA ACTGGGTAAA GTTGAAACAA AGCTGCATAA AAAGAATGAT ACTTTTTATT TAGATACGTT AAACATTGTC AGTGGAAAGA ATAAGTTTTC AATGACTGGT GATTGGAAAT TAAATAAAGA GAGCAGTAAA TCGTCTTTTT CAGCAAACGC CTCGGGTGAT GATAACTCTG AATTATTAGC ACGCTTTGGT ATTAGTACTG GCATTCAAAA CGCGACTTAT ACAATGTCGG CTAACCTAAA TTGGGATGGC GCGCCTTGGC GAATTAAGAC AAATACTTTA GCGGGTGATC TTGCGTCTAC CTTGGATGAA GGTGTGATTA CCGACGTGAA GGGGGCTGCT CGTTTTCTTG GTTTATTTAG TATGGATTCT ATTATTCGTA AAATGAAACT CGATTTTAGA GATGTTTTTG ATGATGGGAT GGCATTTAAC TCGATAACTG GCAGTGGAGA AATGCGTAAA GGCGTCTTTG TTAGTAATAA TTTAGTGATG GATGCGGTTG CTGGTGAAAT GAAGATAAAA GGCAAAGCGG ATTTGAATAC TCGTTTAGTT GATGCAGAAG TTAACTTTAC GCCGGATCTA ACCTCGGGTA TTCCTATTAT CACGGCATTT GCGGTTGCGC CACAAACGGC TATTATTGTA CTTGCGGTCG CCACCGCTAT TTCACCGGTT ATTGATGTTA TTACTCAAGT GAACTATAAA GTGGAAGGGC CTTTAGATGC CCCTACGGTT AAAGAATTAT CTCGAAGCCA AGGTGAATAT AAGCTTCCTG AGTCAAATGA ATAA
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Protein sequence | MTTKLIRTER CLMGLLLLVF LLAALVITSL RLLLPTLNKY QPEIEQLLSQ STGFSISIGE VKGRWRNTNP SLNLTKLTAT DPNTGDEIIS VGSVEIQLNI LSSLWAQQPQ FADLRIDKLT ADLTSLGNDK SEENKLEVDD KNTEDSLSKR LEDLFLVRLN HFSIKNSHVT FTALNGNEKT ILIDSLQWRN ESRKHLAEGV VSVLGSEINQ LKVIANFKEK GTFKSLDGDF YVEAQNIQIT PWIKDNIQQE YGVTEGEVSV NAWLSFKNGQ PIDALVEAAP SYINWEEDKT IHKLSIESGV FELQPEKEGW KVISSGIQIK HEDDEWPELA GNFVWQPSKW ILNLGHIDLE NALGLKTLLP ASQDEITNLL GTLNPKGDID DIRVEYDATT GLNYSASIHA AGMNQWELLP GFHKLDILVA GDETKGKAEL SLVDDTLPYG DVFQAPLNIE NAKVTAYWKV NDEGWRLWSD YIDVSTPDLQ AKGEFRLDFP KDKPSVLSFY AEADAFNADQ TWRYLPTLAL GQDLTDYLSS AVQGGSAKTV QLLWYGELSD FPYTKYDGIF QIKVGLKDAK FSFDTAWPPL TNLQLDLMFQ NASMFLSSHS ADLMGVHATR VTGQIANLAE DGKLTIRARA NGSGKAVREY MTATPLVDSV GAALNSIQID NRVDALLRLD IPFNSEDVRA WGYADLANNH IELQSPNIEL TNAKGRIEFD NDVVKAKGIK ASLLGQPISL SFNGETQSDF YGVNIDVKGK WNIDPLREYI DSPLIDKVKG TSIWDTSINL QMADVGFTYQ IGMDAALNDI QSTLPYPLAL EKGSTDKAVL QVSGNAERLS GRLIFPDAKY QAEISIDKET PVIDASYLIV GRGNFKVSPI VGHSASLNTK NLDADAWIEE PIQSKEKPSS GSKSKASSFP VIPMPTRIDT DIKSLRLASI DWNDVNADIR KKSQGWYFQV QSQEVDGKAT WKNNEALAVQ LDNLHIFIPS LDNVDSEGGL NYAKAKDPLI SSFDREFFKL MPNLELTIKD TWVQGYKLGK VETKLHKKND TFYLDTLNIV SGKNKFSMTG DWKLNKESSK SSFSANASGD DNSELLARFG ISTGIQNATY TMSANLNWDG APWRIKTNTL AGDLASTLDE GVITDVKGAA RFLGLFSMDS IIRKMKLDFR DVFDDGMAFN SITGSGEMRK GVFVSNNLVM DAVAGEMKIK GKADLNTRLV DAEVNFTPDL TSGIPIITAF AVAPQTAIIV LAVATAISPV IDVITQVNYK VEGPLDAPTV KELSRSQGEY KLPESNE
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