Gene VSAL_I0465 details

Gene Information

• Locus tag: VSAL_I0465
• ID: 6986515
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 520546
• End bp: 522531
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643378847
• Product: regulatory protein CsrD
• Protein accession: YP_002261990
• Protein GI: 209694062
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.367243
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAAAAA CCCCTAATTT ACGATTAAGT AACCGCCTTA TTTCCTTTGT TACTTTAATG 
GTTTCTGCTG CTATTTTTGT TTTATTCGTG GGTGGAGCAA TATCCTTTAA ACAAATTGGA 
ACCGAATACT TAGATCATTA TTTGGTTGGT GTTGTTAATG TGGTTGATGA AGAGCTTCTA 
GAACCAGAAG AAGCGACATC AATGGCGAAA TGGTTACCAA AATTATTAAA AGCCAGTAGT 
GTAATGAGCA TGGAATTGTC ATCAGAATCA GGTCCTATTT ATGCTTTTCA ATCGTTAGCC 
ATCCTTCCCG ATGATAATTT ACTTTATCAA AAAACGTATC CCCTCGATCT TAATAAAGGG 
TATTCGATTA CCTTTAAATC TTTACCTCCT TATAGTGCGT TTACTTATTC GTTAGGTGCT 
TTGTTTTCTA TCACTGCAGC CATTGCCATT ATTGTTGTTT CTCTACTTTG GGGAGTGGTG 
TGGTTAAGAA AGCAACTTTA TGGCTCGGAG CTCTTAGAAG AAAGGGGGAG AATGCTTTTG 
GCCGGAAAGG TCGATAGTTA TGAAGTGGGT AGTGAAGAAG AGTGGCCCGC GACCGCAAGT 
TTGGCGTTAG ATAATGTGAT CGCTGAATTA AAAGATGCAC GTAAAGAGCG CAGTCGATTT 
GATACATTTA TTCGAACTCA TACCTTTTTA GATCAATTGA CGGGCTCTGC AAATAGAGTC 
TTGTTTGACA GTAAATTAGA ATCCACATTG CAAGAATCTG AAAGTCAGGG TGTTTTACTT 
CTGTTGAGAA TTAATGGATG GGAAGATCTG ATTGAAGAAC AAGGAAAGCG AGCGGGTGAT 
GAGTTAATTG TCGAATTAGG GAAGCAGTTA AATAATTTGA TTCAACGTTA TAGTGATAGT 
GTACTTTCGC GTTATTACAC ATCTGAATTT GCTCTTCTTA TTCCTCAACA GTCATTAAAA 
GAAGCGAAAT TACTGTCTTC TCAGTGCTTA AAAATGGTAG AGAAAATCAT ACCTCCAACA 
AGTTTAGATG CTGATAATTG GTGTCATATT GGTGTGAGCA TGTATGTCAG TGGTGAGCAA 
CGTGGGCGAC TGATGAATGA GTTAGATATG GCTCATCGTA GTGCACTATT ACAAAACAAC 
AATAGTTGGT CATTATTTAA AAAACAGCAA CAACTAATCG AGAGTTTGGG GAGTGTCCGT 
TGGCGTACAT TGTTTGATGC TATTTTTGAA CAAGAGCAAC TCGTGCTTTA TAAACAAACT 
ACCTTTTTAT TTGAAGGGAA TAATATAATC CCACTTCACT TGGAGTTATT TTCAAGAATT 
AAAGATGAAA ATGGTATTCA AATAAAAGCG TCTCGCTTTT TACCCGCGAT AGAGCAAGTG 
GGTTATCAAA TAAAGCTTGA TAGTGCGGTC TTAAAACAAG CATTTCCATT ATTAAATGAT 
ACTGAAATGT CTCAACATTC ATTTTCTGTC CATTTACATA TAAAAAGTTT ACAAAATAGT 
GCATTTATTC GCCAGTTAAG AGATCGGTTA TTACAAACCC CAAGAGAAGA ATTACAACGA 
TTAAGTTTTG AATTAGCGGA AGGGCAAGTT GTGACGCATT TAGATTCAGT ACGACCAATT 
GCAAAAATGT TAAAAAGTTT TGGTTGTAAG CTGGTTGTAG AGCAGGCAGG TCGCACTATT 
GTAAGTACTC ACTATATTAA AGATTTGCAT GTTGATTACG TGAAATTACA TCGAAGTTTG 
ATTAAAGACA TCCATCAACG ATATGAAAAT CAACTGTTTG TACGAAGCTT ATTAGGGGCT 
TGTGAAACGA CAGGGGCTCA GGTTATTGCG GTTGGTATAG AGAAAGACAA AGAATTAAAA 
CGATTAAAAG AGTTGGGTGT TAAAGGCGGT CAAGGTCGTA TTTTTGAGGT TGAAACCAGT 
CTTTTTCATC AACAAAAGAA AATCGCGATC CCTAAACGAA GGAATCGTTG GGAAAAACGT 
TATTGA 

 

Protein sequence

MRKTPNLRLS NRLISFVTLM VSAAIFVLFV GGAISFKQIG TEYLDHYLVG VVNVVDEELL 
EPEEATSMAK WLPKLLKASS VMSMELSSES GPIYAFQSLA ILPDDNLLYQ KTYPLDLNKG 
YSITFKSLPP YSAFTYSLGA LFSITAAIAI IVVSLLWGVV WLRKQLYGSE LLEERGRMLL 
AGKVDSYEVG SEEEWPATAS LALDNVIAEL KDARKERSRF DTFIRTHTFL DQLTGSANRV 
LFDSKLESTL QESESQGVLL LLRINGWEDL IEEQGKRAGD ELIVELGKQL NNLIQRYSDS 
VLSRYYTSEF ALLIPQQSLK EAKLLSSQCL KMVEKIIPPT SLDADNWCHI GVSMYVSGEQ 
RGRLMNELDM AHRSALLQNN NSWSLFKKQQ QLIESLGSVR WRTLFDAIFE QEQLVLYKQT 
TFLFEGNNII PLHLELFSRI KDENGIQIKA SRFLPAIEQV GYQIKLDSAV LKQAFPLLND 
TEMSQHSFSV HLHIKSLQNS AFIRQLRDRL LQTPREELQR LSFELAEGQV VTHLDSVRPI 
AKMLKSFGCK LVVEQAGRTI VSTHYIKDLH VDYVKLHRSL IKDIHQRYEN QLFVRSLLGA 
CETTGAQVIA VGIEKDKELK RLKELGVKGG QGRIFEVETS LFHQQKKIAI PKRRNRWEKR 
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