Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0095 |
Symbol | |
ID | 6986308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 128498 |
End bp | 130051 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643378488 |
Product | transport protein, extracellular solute-binding protein |
Protein accession | YP_002261646 |
Protein GI | 209693718 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0865281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCA TTAAGACTAA ATTAGCGATC GCGATTATGG CTGCAGGCTT AAGCTTTAGT GCTGCTGCGG CAGATATTAC GGTAGCTTAT GATGCTGATC CAGTATCTCT TGACCCACAT GAGCAACTAT CAGGCGGTAC ACTGCAACTG TCTCACATGG TGTTTGATCC CCTAGTTCGT TATACGCAAG AGTTCGACTT TGAACCTCGT TTGGCTGAAA AATGGGAACG TGTCGATGAC AAAACGTTCC GTTTTACGTT ACGTAAAGGT GTGAAGTTCC ATTCTGGCAA TACAATGACT GCAGATGATG TGGTATGGAC ATTTAATCGT CTTAAAGACT CTGCGGATTT TAAAGCGATT TTCGCACCGT ATGAAAAATT AGTAAAAATT GATGATTACA CCGTAGAACT TATTTCTAAA GGCGCTTATC CGTTGGTTCT TCAAACCGCG ACTTACCTTT TCCCTATGGA TAGCAAGTTC TACTCAGGAA AAACTGAAGA TGGTAAAGAT AAAGATGAAA TCGTAAAACA CGGTAATTCA TTTACTTCAA CGCACATCTC TGGTACTGGC CCATTTGTTG TTAAGTCTCG TGAACAAGGC GTGAAAGTCG TGTTTGATCG TTTTGACGGT TACTGGGATA AAAATTCTCC AGGTAACGTC GATGAGCTGA CTTTGGTTCC AATTAAAGAA AATGCAACAC GTGTTGCTGC GCTTCTTTCT GGTGACGTAG ACGTTATCGC CCCTGTGGCA CCGAATGATC ACAAGCGAGT GAAAAATACG AAGGGTATCG ATTTAGTTAC ATTACCTGGT ACTCGTCTAA TTTCATTCCA AATGAATCAA ACAAGCAACG AAGCATTAAA AGATGTACGT GTTCGTCAAG CTATCGTTCA TGCAATCAAT AACGAAGGTA TCGTTAAGAA AATCATGAAA GGCTTTGCGA CAGCGGCCGG TCAGCAATCT CCTCCAGGTT ATTCTGGCTA TGATGCTGAT TTGGTTCCAC GTTATGATCT TAAAAAAGCA AAAGAGTTGA TGAAAGAAGC GGGTTACGAG AATGGCTTCA AACTTAGCAT GATGGCGCCA AATAACCGTT ATGTGAATGA TGCAAAAATC GCTCAAGCTG CGGCAGCAAT GCTGTCTAAG ATCGGAATCA AAGTGGATCT TAAAACGTTG CCAAAAGCAC AATACTGGCC TGAATTTGAT GTTTGTTCTG CGGACATGAT GATGATCGGT TGGCACTCAG ATACAGAAGA TTCAGCGAAC CTTACTGAAT TCTTAACGAT GACTCGTAAC GAAGAAACGG GTAAAGGTCA GTATAACTGT GGCCATTATT CAAACCCTGA AGTTGATCGT CTAATTGAAG CGGCAAACGT AGAAACGGAT CCAGCGAAAC GCAGTGAGAT GCTGAAAACA GTGGAAGACA CGTTGTATAA CGACGCGGCG TTTGTTCCTC TGCATTGGCA AAATCTTGCG TGGGGTGCAA AATCAAATAT TGATATTCAA CCAATTGTTA ACTCGATGGA ATACCCATAC TTTGGTGACT TAGTTGTTAA GTAA
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Protein sequence | MKTIKTKLAI AIMAAGLSFS AAAADITVAY DADPVSLDPH EQLSGGTLQL SHMVFDPLVR YTQEFDFEPR LAEKWERVDD KTFRFTLRKG VKFHSGNTMT ADDVVWTFNR LKDSADFKAI FAPYEKLVKI DDYTVELISK GAYPLVLQTA TYLFPMDSKF YSGKTEDGKD KDEIVKHGNS FTSTHISGTG PFVVKSREQG VKVVFDRFDG YWDKNSPGNV DELTLVPIKE NATRVAALLS GDVDVIAPVA PNDHKRVKNT KGIDLVTLPG TRLISFQMNQ TSNEALKDVR VRQAIVHAIN NEGIVKKIMK GFATAAGQQS PPGYSGYDAD LVPRYDLKKA KELMKEAGYE NGFKLSMMAP NNRYVNDAKI AQAAAAMLSK IGIKVDLKTL PKAQYWPEFD VCSADMMMIG WHSDTEDSAN LTEFLTMTRN EETGKGQYNC GHYSNPEVDR LIEAANVETD PAKRSEMLKT VEDTLYNDAA FVPLHWQNLA WGAKSNIDIQ PIVNSMEYPY FGDLVVK
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