Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_p08206 |
Symbol | |
ID | 5552729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009777 |
Strand | - |
Start bp | 35589 |
End bp | 36782 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640898083 |
Product | conjugal transfer protein |
Protein accession | YP_001436073 |
Protein GI | 156936722 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 0.0354612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGATG ACAACACCAT CCCAAGCGCT TATGAAAGCG CCAACCTCGA CCGTGGCGAG CTCACGGTGA GCGGTCGTAA AAAGAAAAAC AAAGCGGTCA TTGTGATCGC TTTGGTGATC CTCTCTTTGG TCGTCGTCGC TGTGGGAGTT CTGTTCGCAA TTAATCAATT TCGTGAAGCG GAAGTGGAAA CAAAGCCCCT ACAGCCAGAG TCTACTGCCG AGGTGATTGG CGTTGAAAAA GGCACAGTCG GCAACGACAG TGCTTGGTTT GAGAAAGCCA AGCGTGACCA TGAAAAAGAC AAGGCGCAGC AAGAGCGCGC CGCACAGTGG AAACGAAAAC AAGAGCTCAA GCAAGCCAAA GCGCAAGCAA CGCAGCAGCA ACCTGTCACT GTGCCTAAAA CGGACGTTCC TGAGCCCAAT GTCGCAAAGC AACCTTCCGC CACATCAAAG CGAGGCAAGA AAGCACCACC GACTCCACAA GAGCGTCGCT TAATGGGTAG CCTCATGGTT AACGTTGAAA GCGGCAATGC CGCCAGTAGC CAAAGTACTA CTGAACCTGC CTCTTACGAC AACAGCTATG ACGCACCGAC CTTCGCGATG GGTCACGCCG CCAAGCGCAA GCAAGGAGGA TTAGATTTTC TGCTGAAACA TGGCTCAATC ATTCCTTGTG CACTCTACAG TCAGGTCATC TCTGACTATC AGGGCATTGT GATGTGTCGC GTCACTCAAG ATGTGTACAG CGCCAATGGT AAAGCCTTAT TGGTAGAGCG AGGTTCAATG CTCACGGGTT CGCAGAATGT TCAGTTAGAA GCAGGGAAAA ACCGCGTATT CACAACATGG GCTGATATCG AGACGCCGAA CGGGATAGCC ATTCGTATCG ATTCACTGGG TGCAGGTCGC CTCGGCGCAA GCGGTAACGA GGCTTGGGTC GATAATCACT TTAAAGAGCG CTTTGGTGGC GCAATTTTAC TGTCCTTCCT CGACGATGCT TTTGGCGCAC TCGCAGAAAA AGCCGCTTCA TCGGATGGGG ATATTACCTT TGATAGCTCA ACCGAGAACG CCAGCAACAT GGCAGAGAAG GCTCTAGAGA GCAGCATCAA TATCTCACCA ACGGGTTACA CCCAAATCGG TCAACGCATC AACATCATTG TTGCTCGCGA CATTGATATG TCGAGTGTGT ACGCCTTCGA GTAA
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Protein sequence | MSDDNTIPSA YESANLDRGE LTVSGRKKKN KAVIVIALVI LSLVVVAVGV LFAINQFREA EVETKPLQPE STAEVIGVEK GTVGNDSAWF EKAKRDHEKD KAQQERAAQW KRKQELKQAK AQATQQQPVT VPKTDVPEPN VAKQPSATSK RGKKAPPTPQ ERRLMGSLMV NVESGNAASS QSTTEPASYD NSYDAPTFAM GHAAKRKQGG LDFLLKHGSI IPCALYSQVI SDYQGIVMCR VTQDVYSANG KALLVERGSM LTGSQNVQLE AGKNRVFTTW ADIETPNGIA IRIDSLGAGR LGASGNEAWV DNHFKERFGG AILLSFLDDA FGALAEKAAS SDGDITFDSS TENASNMAEK ALESSINISP TGYTQIGQRI NIIVARDIDM SSVYAFE
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