Gene VIBHAR_04793 details

Gene Information

• Locus tag: VIBHAR_04793
• ID: 5557929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009784
• Strand: +
• Start bp: 55928
• End bp: 56449
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640909272
• Product: P pilus assembly protein
• Protein accession: YP_001446929
• Protein GI: 156976023
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGCTA AATTCATTCG CTCATCAATC GCAGCAACTT TTCTTTTTGG ACTAATGTCT 
ACAACACCTG CTTTGGCAGA AAACACGACT AACGTTTACT TTACAGGTGA AATCGTAGAA 
TCAGCATGTG GTCTATCTCC AGACAGCATT GACCAGACGA TCCAACTTGG TCAGCAGCCT 
ACACACATCT TTAAGGCGAA AGGTGATCGC TCTACGCCAG TGCCTTTCCA AGTGAAGTTG 
ACTGATTGTG ATACGAGTGT GGCAACAACA GCGCAATTCA CTTTCGCTTC TAACCCAGAT 
ACAACCGGTG ATCTGTTCAG CGTAGAAGGC GGTGCGACTG GCATTGGTGT GCGTATCCTT 
CACAATGGTA ACCCAATCAA CAACGGTGAC GTAGCGGCAA GCAACGTACT GGTCGACGGC 
ACAAACATCG CGTCGTTCTC TGCGGCATAT GAAGCGAACG TAGACGCTGT AACTGCTGGT 
GTTGCAGAGT CATGGGCGCT ATTACGCGTG ACTTACCTAT AA 

 

Protein sequence

MKAKFIRSSI AATFLFGLMS TTPALAENTT NVYFTGEIVE SACGLSPDSI DQTIQLGQQP 
THIFKAKGDR STPVPFQVKL TDCDTSVATT AQFTFASNPD TTGDLFSVEG GATGIGVRIL 
HNGNPINNGD VAASNVLVDG TNIASFSAAY EANVDAVTAG VAESWALLRV TYL