| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002322 |
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| Symbol | |
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| ID | 8556007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 778947 |
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| End bp | 779963 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646405370 |
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| Product | type IV pilus biogenesis protein PilM |
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| Protein accession | YP_003284949 |
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| Protein GI | 262393095 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.17332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAGC TAATCGTTAC CGGCATCGAT ATAGGCCATA ACAGCCTCAA AGCCGTAGTA
CTTAAACCCA CAGGCAACAA TTACGCTCTG TTGGGTTACA AAGAAATATT ACTAAAGGAA
GGTATTGTCG CTGAAAATAA CACTATAAAT CATCAAGAAA TTGTAAAGAC CCTAAAGCTG
ATTAAAAAAG AACTGCCTTT TGGTGCTAAA AAGGTCGCAA TTTCAGTGCC TGATAATTCG
GTGATCAGTA AAAAATTGCA AATAGAACAA AACCTTGAAG ATAGCGAAGT TGAGTTTGCT
GTGATTCAGG CATTTTCTCA TCAATCGCCA TTCCCTGTCG AAGAGCTGAG TTTAGACTTC
GTCCGTCTTC GTGCCGAAGA TGGGTTGCGT GGGACTGATA ACTATCAAGT GTTTGCGACA
AGAAAAGATG TGGTCGATAG TCGCGTGGAT GCATTACAAA AATCCGGACT AAAACCCGTT
TTAGTGGACG TGCATTCACA AAGTCTTGGT CATATCTGGA AGCTTACCGC CGATCGCTTT
CCTGACAAAA ATAAGTACTG CTTACTCGAT ATTGGCACCT CATCGAGCTC CTTTACCATG
TTTACCGAAC AAGGTGAGCT GTTTCACAAG GAGTTTGCTT GCGGCACTCG AGGAGCAAAC
AGCCCTGTGC AAGATGATTT GATGTCCGAT GATGCTCAGG AGAAAACAGA GCTGTTTAAT
CGCCAAATTG TGGAACGGGT GAAACGTCAG ATGCAGCTCT ACACTTCAAT TAATGGCTCG
CAAAATATCA AAGGTATCTG GTTATCAGGG GAAGGAGCTT CGACACCAAT GCTCGCGGAA
GAGTTATCTC AGCAACTGTC ACTAGAGTGT GAATTGCTAA ACCCGCTAGG GCTATTTGAG
ATGAAGGTGT CCAAACGTAA ACGTCGTGCC GCGGATTGGC AGCATTTCTC TACAGCCGCA
GGACTCGCGA TTCGTGGCAT TCATTGGCTA GGAGGTGCGC GTGCTTTATC GCATTAA
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| Protein sequence | MDKLIVTGID IGHNSLKAVV LKPTGNNYAL LGYKEILLKE GIVAENNTIN HQEIVKTLKL
IKKELPFGAK KVAISVPDNS VISKKLQIEQ NLEDSEVEFA VIQAFSHQSP FPVEELSLDF
VRLRAEDGLR GTDNYQVFAT RKDVVDSRVD ALQKSGLKPV LVDVHSQSLG HIWKLTADRF
PDKNKYCLLD IGTSSSSFTM FTEQGELFHK EFACGTRGAN SPVQDDLMSD DAQEKTELFN
RQIVERVKRQ MQLYTSINGS QNIKGIWLSG EGASTPMLAE ELSQQLSLEC ELLNPLGLFE
MKVSKRKRRA ADWQHFSTAA GLAIRGIHWL GGARALSH
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