| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001266 |
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| Symbol | |
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| ID | 8559578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 1437659 |
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| End bp | 1439695 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646408935 |
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| Product | GGDEF family protein |
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| Protein accession | YP_003288414 |
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| Protein GI | 262396561 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCTCCC CTCAAGCCTT AGCCATTTTT GAAGATCCTT CAATCAATCC CCGTTATTCT
GTGAGTTTCT CTCGCGGGGA GCTTTACCCA ATCCAAAGCT ATCCTGACAG CTTCTGGGAG
TGGGCGAGTC AGTTTGACAC TTCTGAAAGC ATCATTCCTC TGGCGATCAA TACTTGTAAC
TGGAATCACA CCCAAGATTT AGGTGGAGAT AGTTACATAA TGATGCTCGA TAACACGCCT
ATCAAACGCA CCTACCTACT GATTCAATCT GTTCATGCTC GCACGGCACA CAATATCTAT
GAAGAAAGCT ATGATGCAAT GCAGCTTGCA GCGGCGCGTT GGCAGTGCAT TCGCGCCGAG
AAAAATGCGT CGCAAGAGAT GAGACACAGA GACATTCGTG AAGCGCAATA TGTCGATGAA
ATTAACCAAC GCGAGCGCTT TATCGAGAAC ATGAAGTTAG TTCAGCAAGT TGCTCTCGAG
ATCTCCAACC CTGATTCCTT AAAAGATTTG TATTACAAAG CCGTCGAAGC GCTACGTCAA
CGGTTGGGGT TTGATCGCTC CACACTGATG CTTTTGGACA TGAAAAAGCG TAGTTTCAGT
GGAACGTACG GCACGGATGA ATCAGGCATC ACCATTGATG AGTTTCACAC GCAATACGAT
TTACACCAAC TGAGCGAAGA ATACATCGCT GCGCTGTCAA GCCTTGAGAG CAACCTAGTG
ATCGTGGAAG ATGCGCCGAT ATACACAGCT GGTAAAGTGG TTGGGCAGGG GTGGAACGCG
ATGTTGATTC TACGTGATGG CAATGAGCCA TTTGGTTGGT TCGCGCTTGA TAACTTTATT
CATCGCAAGC CAATAACAGC GTATCAAAAA CAGATGTTGG ACTCGTTTGG CTCCCTTTTC
TCACAAATTT ACATTCGAAA GCGCCAGGAG CAGAACGTGC GTATGTTGCA TTCAAGCATG
GTTGAGCTAT CACGCTGTAC AACCGTCAGT GATGTATGTA AATCGGCCGT CACTTTTGCC
ATCAAAAATC TTGGTATTGA TCGGATGGCG GTGTTTTTGA CCGATGAAAA CTGCTCATAC
ATGCAAGGTA CTTGGGGGAC TGACATTCAA GGCAATGTGG TGGATGAGTC TTATTTCTTT
GGTGAGACAC AAGACTTTTC GTTGATCAAT TTAGCTCGCG CCGTACCTAG TGAAGTTGCA
TTTGAGGAAT CCGTTCCTAT TTATCATGAC TGTAATATTG TCGGCTTTGG CTGGGCTGCG
ATGACGGTTT TGACTTCGAA TAGCAGCGGG CCCATCGCCT TTATTGCCGT TGATAACTTA
TTGACGCGCG CGCCGCTGAC TTCTCAGCTA CGTGAAGTGA TTCGTATGTT CGCTTCCAGT
CTAGCGGAGG TTTTGCAGCG CACTCAAGCG CAAGAGGCGA TTCGCGGATT AAACGAAAAC
CTGGAGTTAG AAGTACAGAA CCGAACCAAA GAGTTGGAAG AAGCCAACCG ACAGCTTGAG
GTACTTTCTA AACTTGACCC TCTGACACGT CTTGGCAATC GCCGTATGTT AGAACATGTG
ATGCAGAAAT ATTGCGCGCT AGAGTGTGAG GAAGCGATGT CCTTTGGTCT TATCCTGATT
GATATTGATC ACTTTGGCTT GTTTAACAAT CACTATGGCC ATCTCGAAGG GGATATCGCA
CTAATGCGCG TGGGTCATAT CTTGGATCAT CATACCAAAG GTGAAGACGA GGTTTTCTGT
CGCATTGGTG GAGAAGAGTT TGTGTTACTA ATGATCGGCT CTGATCAAGA GGCGGTAAAG
CAGAGAGCGG AACGTATTCG TCAATGCATT GAAGATGAAG GCATCAAACA CCAACACAAC
CCAGAAGGGG AGTTGCTCAC TGTGTCAGTC GGTTATTCTT GCTACAAAAC GAAAGGCAAA
GACTTTAATT TCGACCATCT TTACCAGTTG TCGGATAAGG CTCTCTATCA AGCGAAGAGC
CATGGTCGAA ATTGCGTAAG GCGATATGAG TACGAGCATC AAGCTTTTGT TGAATAA
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| Protein sequence | MFSPQALAIF EDPSINPRYS VSFSRGELYP IQSYPDSFWE WASQFDTSES IIPLAINTCN
WNHTQDLGGD SYIMMLDNTP IKRTYLLIQS VHARTAHNIY EESYDAMQLA AARWQCIRAE
KNASQEMRHR DIREAQYVDE INQRERFIEN MKLVQQVALE ISNPDSLKDL YYKAVEALRQ
RLGFDRSTLM LLDMKKRSFS GTYGTDESGI TIDEFHTQYD LHQLSEEYIA ALSSLESNLV
IVEDAPIYTA GKVVGQGWNA MLILRDGNEP FGWFALDNFI HRKPITAYQK QMLDSFGSLF
SQIYIRKRQE QNVRMLHSSM VELSRCTTVS DVCKSAVTFA IKNLGIDRMA VFLTDENCSY
MQGTWGTDIQ GNVVDESYFF GETQDFSLIN LARAVPSEVA FEESVPIYHD CNIVGFGWAA
MTVLTSNSSG PIAFIAVDNL LTRAPLTSQL REVIRMFASS LAEVLQRTQA QEAIRGLNEN
LELEVQNRTK ELEEANRQLE VLSKLDPLTR LGNRRMLEHV MQKYCALECE EAMSFGLILI
DIDHFGLFNN HYGHLEGDIA LMRVGHILDH HTKGEDEVFC RIGGEEFVLL MIGSDQEAVK
QRAERIRQCI EDEGIKHQHN PEGELLTVSV GYSCYKTKGK DFNFDHLYQL SDKALYQAKS
HGRNCVRRYE YEHQAFVE
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